Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0144 ATGGCAGATCTTGCTAGCTACGGGAATGCCGACCGTGACTTAGAGCAGATTTGCAAGGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGCCTCAAAGCTCTGATATCTTCTGGTCAAGGTGGCCGGTCCAAAATTGATGGGTGGAGTGATGGGGGTCTCTATCTTGATGATAACAGAGACTTTGCATCAAGTAGTCCAAGTGAAAGTTCAGTTAGTACACTAGATATTAAATCTCCTGATACTTCTGTGAATTCTAATCCTAATACTGCTTCAAAGTCCTTTAGACCAGTGAAGTCTGTGAATTCTGAAAGATCACATTCACCATTAGACCCTTCAAATATGCAAGCAAAAGGATCTGGTTTAGATGTTTTTCGAGTTAGTGTTTCAAGTGCCCCCAGCACATCAAGTCATGGATCTGCCCCCGATGACTGTGATGCTCTGGGTGATGTATACATATGGGGGGAGGTTATCCCTGAGAATGTTATGGGAGTTGGCGTACATAAAATTTGCAATCAGTTCAGCCCAAGGGTAGATGTGCTTTTGCCCAGGCCACTGGAATCCAATGTAGTTTTAGACGTACATCATATAGCATGTGGTGTTAAACATGCTGCACTAGTCACAAGGCAAGGTGAAGTATTTACTTGGGGTGAAGAATCTGGAGGACGTCTAGGCCATGGTGTTGAGAACAATGTGGTTCAACCTTGTCTAGTTGAAGCTTTGGCTTCTATGACTGTTGATTTTGTTGCTTGTGGGGAGTTTCACACCTGCGCTATTACAGTGGCTGGGGAACTATATACTTGGGGTGATGGAACTCATAATGCTGGACTTCTTGGTCATGGCACTGACGTAAGTCATTGGATACCAAAACGAATTTCAGGTCTACTTGAGGGACTTCAAGTTGCTTTTGTCTCTTGTGGTCCATGGCACTCAGCCTTGATAACTTCAACTGGGCAACTCTTCACATTTGGTGATGGAACATTTGGTGTCCTGGGTCATGGAGATAGGGAGAATGCTTCATATCCTAGAGAAGTACAATCATTGTCAGGGTTAAGAACATTAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTGGTCGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCTGGTAAATTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGAGACAAGGATGCCCGACTTGTACCAACTTGTGTCCCTTTGCTCATTGATTACAATTTTTATAGCATTGCTTGTGGCCACAGTTTGACAGTGGGCCTCACAACATCAGGACGTGTTTTTACAATGGGAAGCACTGTTTATGGTCAGCTTGGCAATCCACTGTCTGATGGAAAGTTGCCCTGCTTGGTCGAAGACAAGCTTTCTGAAGAGTGTGTCGAAGAAATTGCATGCGGTGCATATCATGTTGCAGTTTTAACATCCAAAAATGAAGTTTATACGTGGGGGAAGGGTGCTAATGGGAGGTTGGGTCATGGGGATGTTGAAGATAGAAAAAACCCAACTTTGGTTGAAGCTTTGAAAGATAGACATGTTAAAAATATTGCGTGTGGTTCAAACTACTCTGCTGCCATATGCCTTCATAAATGGGTATCGGGTGCTGAGCAGTCTCAATGCTGTACTTGTAGACAGCCATTTGGCTTCACTAGAAAGAGGCACAACTGTTATAATTGTGGGCTTGTGCATTGCCACTCATGCAGTTCAAGGAAAGCATTGAGAGCAGCTCTGGCTCCTAATCCTGGAAAGCCATATCGTGTTTGTGATTCTTGTTTTGTAAAATTGAACAAGATGGCAGAAGCTGGCATTAATAATAGAAGGAATGCCATGCCTCGTTTGTCTGGTGAAAACAAGGACAGGTTAGATAAGTCTGAGGTCAGGTTGGCCAAGTCACCGGTTCCTTCTAATATGGATTTGATAAAGCAGCTAGATAGCAAGGCGGCTAGACAAGGGAAGAAGACTGATACATTCTCTCTGGTTCACACCTCACAAACCCCTTTGCTGCAACTGAAAGATGTTGCCTTGTCTACTTCTGTTGATCTGAAACGCGCGGCTCCAAGGCCAGTTCTGACATCATCTGGGGTAAGCTCCAGGTCTGTGTCCCCATTTTCTAGAAGACCAAGTCCACCTCGTTCAGCTACGCCTATACCAACAACATCAGGACTTTCTTTCTCAAAGAGTCTAAATGATAGTCTGAAGAAAACCAACGAACGTTTAAATCATGAAGTGCTGAAGTTACGCACTCAGGTTGAGAGCCTGAGAAAAAGGTATGATTTGCAAGAATTAGAGCTTCAAAGGGAAGAAAAGAGAACTCAGGAAGCTATGGCAATGGCTGCTGAGGAATCTGCTAAATCTAAATCTGCAAAAGAAGTTATAAAGTCACTTACAGCACAGCTTAAAGATCTAGCTGAGAGGCTACCTCCAGGATCTTATGACGCTGACAGCATCCGGCCAGCTTACCTGCCAAATGGTTTGGAGCCAAATGGCGTCCACTATCCTGACTCGAATTGGGAGGGACATACCAGAGCAGAGTCAATCAGTGGATCTAGCCTAGCTTCCTTTGCTCTTGAATCTTCTCTATTCAACAAAAACGAGGTCACAGGAACTTACACAACCAATCCTTACCAGCAAAACTTGGTGCTTGTGCCTTCCAATGGGACAAATGAATACCCAAATGTTATACTTGCAAATGGCGCTGTGTTTCAGGCAACTAGCAGGAGCATATTAGATACTGCCGATGGCAGGAATTCTGAGCCTCTCCAAGATGACGAGAGTGGTTCAAGATCAAGGAATGCTGTACTGGCTGCTAATAGTAATCAAATTGAGGCAGAATGGATTGAACAGTATGAACCTGGGGTGTATATAACACTCATGGCTTTCAGCGATGGAGCGAGAGATCTAAAACGAGTGCGCTTCAGCCGACGCAGATTTGGAGAGCACCAAGCAGAGACATGGTGGTCCGAGAATCGTGAGAAGGTATATGAAAGGTACAATGTCCGTAGTAGCACTGAGAAGTCTTCGACCCTAGCAGCTCGTGTGCCAGAAGGTGCAGTTTCACCTGTTTCATAA 3087 0.4457 MADLASYGNADRDLEQICKDKVEAEVWIAGLKALISSGQGGRSKIDGWSDGGLYLDDNRDFASSSPSESSVSTLDIKSPDTSVNSNPNTASKSFRPVKSVNSERSHSPLDPSNMQAKGSGLDVFRVSVSSAPSTSSHGSAPDDCDALGDVYIWGEVIPENVMGVGVHKICNQFSPRVDVLLPRPLESNVVLDVHHIACGVKHAALVTRQGEVFTWGEESGGRLGHGVENNVVQPCLVEALASMTVDFVACGEFHTCAITVAGELYTWGDGTHNAGLLGHGTDVSHWIPKRISGLLEGLQVAFVSCGPWHSALITSTGQLFTFGDGTFGVLGHGDRENASYPREVQSLSGLRTLAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDARLVPTCVPLLIDYNFYSIACGHSLTVGLTTSGRVFTMGSTVYGQLGNPLSDGKLPCLVEDKLSEECVEEIACGAYHVAVLTSKNEVYTWGKGANGRLGHGDVEDRKNPTLVEALKDRHVKNIACGSNYSAAICLHKWVSGAEQSQCCTCRQPFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCFVKLNKMAEAGINNRRNAMPRLSGENKDRLDKSEVRLAKSPVPSNMDLIKQLDSKAARQGKKTDTFSLVHTSQTPLLQLKDVALSTSVDLKRAAPRPVLTSSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKSLNDSLKKTNERLNHEVLKLRTQVESLRKRYDLQELELQREEKRTQEAMAMAAEESAKSKSAKEVIKSLTAQLKDLAERLPPGSYDADSIRPAYLPNGLEPNGVHYPDSNWEGHTRAESISGSSLASFALESSLFNKNEVTGTYTTNPYQQNLVLVPSNGTNEYPNVILANGAVFQATSRSILDTADGRNSEPLQDDESGSRSRNAVLAANSNQIEAEWIEQYEPGVYITLMAFSDGARDLKRVRFSRRRFGEHQAETWWSENREKVYERYNVRSSTEKSSTLAARVPEGAVSPVS 1028
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0144 1028 SUPERFAMILY FYVE/PHD zinc finger 536 606 IPR011011 -
Lele46g0144 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 355 365 IPR000408 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 210 261 IPR000408 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Lele46g0144 1028 SUPERFAMILY RCC1/BLIP-II 147 537 IPR009091 -
Lele46g0144 1028 CDD FYVE_like_SF 545 598 - -
Lele46g0144 1028 ProSiteProfiles BRX domain profile. 949 1004 IPR013591 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 148 209 IPR000408 -
Lele46g0144 1028 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 540 602 IPR017455 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 262 316 IPR000408 -
Lele46g0144 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 196 206 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 485 532 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 317 365 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 262 313 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 210 258 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 379 426 IPR000408 -
Lele46g0144 1028 Pfam Regulator of chromosome condensation (RCC1) repeat 431 480 IPR000408 -
Lele46g0144 1028 SMART fyve_4 534 603 IPR000306 GO:0046872
Lele46g0144 1028 FunFam PH, RCC1 and FYVE domains-containing protein 1 119 369 - -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 317 368 IPR000408 -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 696 713 - -
Lele46g0144 1028 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 303 313 IPR000408 -
Lele46g0144 1028 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 483 IPR000408 -
Lele46g0144 1028 Gene3D - 368 541 IPR009091 -
Lele46g0144 1028 Pfam Transcription factor regulating root and shoot growth via Pin3 948 1003 IPR013591 -
Lele46g0144 1028 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 16 806 - -
Lele46g0144 1028 FunFam PH, RCC1 and FYVE domains-containing protein 1 370 541 - -
Lele46g0144 1028 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 542 611 IPR013083 -
Lele46g0144 1028 Pfam FYVE zinc finger 536 602 IPR000306 GO:0046872
Lele46g0144 1028 Pfam Transcription factor BRX N-terminal domain 786 819 IPR027988 -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 916 935 - -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 59 116 - -
Lele46g0144 1028 Coils Coil 791 811 - -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 1007 1028 - -
Lele46g0144 1028 Gene3D - 123 367 IPR009091 -
Lele46g0144 1028 Coils Coil 735 776 - -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 693 733 - -
Lele46g0144 1028 MobiDBLite consensus disorder prediction 60 114 - -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 319 333 IPR000408 -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 262 278 IPR000408 -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 212 228 IPR000408 -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 421 439 IPR000408 -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 479 500 IPR000408 -
Lele46g0144 1028 PRINTS Chromosome condensation regulator RCC1 signature 303 319 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0144 Lele-ChrLele46 857955 863014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0144 950 1018 Major Intrinsic Protein MIP AT1G31880 46.377 8.74e-14 72.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0144 46 857955 863014 Lele47g1177 47 17236316 17241588 hybridization
Lele46g0144 46 857955 863014 Lele48g1313 48 17354405 17359426 hybridization