Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0134 ATGCTGGGGGACTCAACTGCGTTAGGAGGTGGCGGAGCTAGCTCTGGAGATGATGCGGCGGCGGCGGCGGCGGCTGCATCTGAGGGAGGAGTTGCAGAACCGCATGACGGTGGTGAGTCAGAAGTTGCGGCGGCGGGAAGCGGTGGTGGAGGAGCTGGATCGAATTCAGGCGAAGAGGGTGGTGGCGGTGACAGAAGCTTCGGCGGCAACCGGTGGCCCCGCCAGGAGACTCTGGCGCTCTTGAAGATACGCTCGGACATGGACGTTGCGTTTCGAGATGCCAGCGTGAAGGGTCCCTTGTGGGATGAAGTTTCCAGGAAGCTAGCAGAACTCGGATACCAGAGAAGCGCCAAGAAGTGCAAAGAGAAATTCGAGAACGTTTACAAGTACCACAAGCGAACTAAAGAAGGCAGAACCGGAAAACCATACGGGAAAACGTACCGTTTCTTTGATCAGTTAGAAGCTCTAGATCACCATCATCAAAACCAAAACCAACCTCATAATGCTAATTCTTTATTGATTCAATCCTCTTCTTCTAATTCTGCTCCTCTACCTGCACCGCCAGTCTCCGTCATACCCACCACCCAACCTCCTCCGTCTGTAATAGTGGCGCCACAAGTAGCGCCTCCTCCTCTTCCTCCTCATGTTAATGCTGCCACTACTACTGTTCCATCAATGAACACTACTTCAATCCCTCCATTGTACCCACCACCCCCAGCACTAGCAGCAACAACAACGATAACAGCAAACCCTACTTTTTTACCCTCGTTCGCTAGCATACCGACGGATCTCTTGTCGAATTCTAGTTCATCTTCGACTTCGTCGGATGAGACAATAGAGGCTCGGCGGAGGCGGAAGCGCAAGTGGAAGGACTTCTTCGAGAGGTTGATGAAGGAGGTGATAGAGAAGCAGGAGGAGTTGCAGAAGAGGTTTCTGGAAGCCATAGAGAAACGCGAGCACGAAAGAATGGTTCGAGAGGAATCGTGGAGAATGCAGGAGATGGCCAGGATCAATAAGGAGAGAGAAATATTGGCGCAGGAAAGATCCATTGCCTCTGCCAAAGACGCTGCTGTAATGGCATTCTTGCATAAGATCGCTGAACAGCAGAATCTCGGCCAACTGGGCACACCGACAACAAATAATATTAACATCCCCAATCCTCCGACGTCGCAGCCCACGGCAGCTCCCGCTCCAGTACCAGCAGCAGTAGTTGCACCTCCGCCGCCGCAGCCACTGCAACCTGTGACGGTGCAACAATCAACTTCAATTCTTTCTACTCCAATGCCGGCTCCGCCTCCATCCACGCAGCAAGGTATAACGAGCATGGAAATTGTAGCAAAAACTGACAACGGGGATAACAGTAATTTGACTACTCCAAGTACCTCGTCGTCGAGGTGGCCTAAAGTGGAGGTAGAGACGCTCATAAAACTACGGACAAACATGGACGCGAAATACCAGGAGAATGGGCCGAAGGGGCCGTTGTGGGAGGAAATCTCCTCCGCAATGAGGAGACTGGGGTACAACCGTAGCTCCAAGAGGTGCAAAGAGAAGTGGGAGAACATCAACAAGTACTTCAAGAAGGTGAAGGAGAGCAACAAGAGAAGACCAGAAGATTCCAAGACGTGCCCGTACTTTCACCAGCTGGATGCACTATACAGGGAGAAGAGTTTCAAGCTGCAGTCAGCGCCGCCGCCGCCGCCGGAGAACATGATGTCTACGCCGCTCATGGTACGCCCAGAGCAGCAGTGGCCACCACAGCCGCAGCAACAAGAAACACGGCAGTCTTCGGGGCCGCAGGTGATGATGGGAAGCGCGGGAACTGATGCAATGGAAGAAGACGAAGAAGAGGACGATGATGGAGGAAGTGGTACCTACGAGATTGTGGCAAGCACGCCAGCTACTTCAGTGGGTGCTTCTGAGTGA 1923 0.5294 MLGDSTALGGGGASSGDDAAAAAAAASEGGVAEPHDGGESEVAAAGSGGGGAGSNSGEEGGGGDRSFGGNRWPRQETLALLKIRSDMDVAFRDASVKGPLWDEVSRKLAELGYQRSAKKCKEKFENVYKYHKRTKEGRTGKPYGKTYRFFDQLEALDHHHQNQNQPHNANSLLIQSSSSNSAPLPAPPVSVIPTTQPPPSVIVAPQVAPPPLPPHVNAATTTVPSMNTTSIPPLYPPPPALAATTTITANPTFLPSFASIPTDLLSNSSSSSTSSDETIEARRRRKRKWKDFFERLMKEVIEKQEELQKRFLEAIEKREHERMVREESWRMQEMARINKEREILAQERSIASAKDAAVMAFLHKIAEQQNLGQLGTPTTNNINIPNPPTSQPTAAPAPVPAAVVAPPPPQPLQPVTVQQSTSILSTPMPAPPPSTQQGITSMEIVAKTDNGDNSNLTTPSTSSSRWPKVEVETLIKLRTNMDAKYQENGPKGPLWEEISSAMRRLGYNRSSKRCKEKWENINKYFKKVKESNKRRPEDSKTCPYFHQLDALYREKSFKLQSAPPPPPENMMSTPLMVRPEQQWPPQPQQQETRQSSGPQVMMGSAGTDAMEEDEEEDDDGGSGTYEIVASTPATSVGASE 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0134 640 MobiDBLite consensus disorder prediction 558 640 - -
Lele46g0134 640 FunFam Trihelix transcription factor GT-2 466 527 - -
Lele46g0134 640 Coils Coil 290 317 - -
Lele46g0134 640 SMART sant 462 524 IPR001005 -
Lele46g0134 640 SMART sant 68 130 IPR001005 -
Lele46g0134 640 MobiDBLite consensus disorder prediction 264 283 - -
Lele46g0134 640 ProSiteProfiles Myb-like domain profile. 458 522 IPR001005 -
Lele46g0134 640 CDD GT1 70 135 - -
Lele46g0134 640 Pfam Myb/SANT-like DNA-binding domain 464 551 IPR044822 -
Lele46g0134 640 Pfam Myb/SANT-like DNA-binding domain 70 156 IPR044822 -
Lele46g0134 640 CDD GT1 464 529 - -
Lele46g0134 640 Gene3D - 72 133 - -
Lele46g0134 640 Gene3D - 466 527 - -
Lele46g0134 640 MobiDBLite consensus disorder prediction 1 71 - -
Lele46g0134 640 MobiDBLite consensus disorder prediction 448 467 - -
Lele46g0134 640 MobiDBLite consensus disorder prediction 582 602 - -
Lele46g0134 640 FunFam Trihelix transcription factor GT-2 72 133 - -
Lele46g0134 640 ProSiteProfiles Myb-like domain profile. 70 128 IPR001005 -
Lele46g0134 640 MobiDBLite consensus disorder prediction 608 622 - -
Lele46g0134 640 PANTHER FI21293P1 36 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0134 Lele-ChrLele46 772192 774977 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0134 64 583 Trihelix Transcription Factor Family AT1G76880 55.109 5.17e-169 494
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Lele46g0134 Myb_DNA-bind_4 2.6e-22 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0134 46 772192 774977 Lele46g0134 46 772192 774977 ECH
Lele46g0134 46 772192 774977 Lele47g1197 47 17432943 17433614 hybridization