Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0127 ATGGACCCCAAGTTCGTCGGAAAGCCGCCGATGACGGTGGACCTCGAGCAGATGCCTGACGTTCCACAGCGTGGGTCCCACCACCGTAGGTCCCACTCCGACACCTCCTTCCGCATCGCTAACTTCGATGAGCTCCTCCTCTTCGACCCTTCCGACCTCGATATCTCCAACCTTCCTTCGCCGGCGTTGCCCAACTCCACCAGCACCAACGCCTCGCCTTTCACCGCCGCCGCTACAGCAAGCGGCTGCGGCGTGCCTGCAGCCATGGATTTTGTCTCAAAGCCGTCGGAAGAACCCGACGGCAGGAATTCACGGTCCAGACCCGCGGGTTCCCCTGTCGGCCATATCCGGAGCTTGTCTATGGACTCTGATTTTTTCAACGGCCTGGGATTGACTGGTGGCGTTGATGGGGACAAAATTGGCGGGCAAGGTGTTGAGGAGAGAAGGCCGAGTCATCATAGGCACAGCAATTCCATGGATGGGTCATCGTCGTTGTCTTTTGAGGCCGACTCTTCCATGTCTATTGACTGTGTGAAGAAGGCCATGGCTCCCGATAAGCTCTCTGAACTTGCTCTCGTTGATCCCAAGAGAGCTAGGAGGATTCTTGCTAATAGGCAATCTGCTGCGCGATCAAAGGAGAGAAAAATTCGGTACACAAATGAGCTGGAAAGGAAGGTACAGACGCTTCAAAATGAAGCAACTAACCTCTCTGCTCAGGTTACTATGCTTCAGAGAGACACTACAGGTTTGACCCATGAGAATAAGGAGCTTAAACTGCGCTTAGAGGCTATGGAACAACAAGCACAGCTTAGAGATGCGCTGAATGAAACATTGAAGGAAGAACTGCAGCGCCTGAAGCTACAAAGTAGTCAAATGGCTGCCATGAATGTCAACCCTTCTTATGGTGGGTTTCTCTCTCAATTTGCTTCTCAGTTAGCGTTGCAACATCTTCCTAATCCTCCATCCCAGCAGGAACAACAACAGCAATCACAGCCCGGCATGCCTCCGTCATCCGCTGATCAACCTTTCAACGGGCAGCCTGGCCCGGACTTCTTGGATTTCAATGGCAAGAACTAG 1077 0.5292 MDPKFVGKPPMTVDLEQMPDVPQRGSHHRRSHSDTSFRIANFDELLLFDPSDLDISNLPSPALPNSTSTNASPFTAAATASGCGVPAAMDFVSKPSEEPDGRNSRSRPAGSPVGHIRSLSMDSDFFNGLGLTGGVDGDKIGGQGVEERRPSHHRHSNSMDGSSSLSFEADSSMSIDCVKKAMAPDKLSELALVDPKRARRILANRQSAARSKERKIRYTNELERKVQTLQNEATNLSAQVTMLQRDTTGLTHENKELKLRLEAMEQQAQLRDALNETLKEELQRLKLQSSQMAAMNVNPSYGGFLSQFASQLALQHLPNPPSQQEQQQQSQPGMPPSSADQPFNGQPGPDFLDFNGKN 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0127 358 FunFam Transcription factor VIP1 195 248 - -
Lele46g0127 358 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 21 333 - -
Lele46g0127 358 MobiDBLite consensus disorder prediction 1 35 - -
Lele46g0127 358 CDD bZIP_plant_RF2 197 246 IPR044759 GO:0003700|GO:0006355
Lele46g0127 358 MobiDBLite consensus disorder prediction 312 344 - -
Lele46g0127 358 Gene3D - 195 247 - -
Lele46g0127 358 SUPERFAMILY Leucine zipper domain 196 248 IPR046347 GO:0003700|GO:0006355
Lele46g0127 358 Coils Coil 212 295 - -
Lele46g0127 358 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 194 257 IPR004827 GO:0003700|GO:0006355
Lele46g0127 358 MobiDBLite consensus disorder prediction 21 35 - -
Lele46g0127 358 MobiDBLite consensus disorder prediction 312 358 - -
Lele46g0127 358 MobiDBLite consensus disorder prediction 141 156 - -
Lele46g0127 358 Pfam bZIP transcription factor 196 253 IPR004827 GO:0003700|GO:0006355
Lele46g0127 358 MobiDBLite consensus disorder prediction 139 166 - -
Lele46g0127 358 MobiDBLite consensus disorder prediction 89 117 - -
Lele46g0127 358 SMART brlzneu 192 256 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0127 Lele-ChrLele46 709030 712225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0127 9 354 bZIP Transcription Factor Family AT1G43700 46.448 1.17e-77 240
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Lele46g0127 bZIP_1 2.6e-07 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele46g0127 46 709030 712225 Lele47g1199 47 17444644 17447955 hybridization