Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0100 ATGGATCCTCATGTTGAAGAGTTGCCTCAATACATACATATAACGCAGAATGATTTTTTGAATAGAAGGCATGTGAAGCAGAAGGAGGAGGATATTGCTATATGTGAATGCAAACATGATTCTAGTGACCCTGATAGTGCATGTGGGGATGGGTGTCTTAACGTCTTGACCAGCTCTGAATGCACCCCTGGCTATTGCCCGTGTGGCATCTTTTGCAAAAATCAGAGATTTCAGAAGTGTGAATATGCAAAAACAAAGTTGTTCCAAACTGAAGGCCGGGGATGGGGTCTTTTGGCTGATGAGAACATTAAGGCAGGCCAATTGATCATCGAATACTGTGGAGAAGTAATTTCATGGAAAGAAGCCAAGCGAAGAGCCCAGGCTTATGAAACTCAAGGTCTTAAGGATGCATTCATTATTTGTCTTAATGCCTCTGAATCCATTGATGCAACTAGAAAGGGAAGCCTTGGTAGATTTATAAATCATTCATGTCAGCCAAATTGTGAGACAAGGAAATGGAATGTCTTGGGTGAGATTAGAGTTGGAATATTTGCAAAACAAGATATACCTGTTGGAGCTGAACTGGCATATGATTATAATTTTGAATGGTTTGGTGGCGCAAAGGTTCGTTGCCTCTGTGGTGCAGCCAAATGTTCTGGATTCCTTGGAGCAAAATCTCGTGGTTTTCAGGAAGATACATATTTATGGGAAGATGATGATGAAAGGTACACTGTTGAGAAAATTCCAGTATATGACTCTGCAGAGGATGAGCCTCCCTCAAAGGTCCTTAGAAGCTTACATTCTGACATTCCTGGTATGCAAGTTAATGGAAAAACCGAACACTCCATGGACGTTGTCATAAAACCTGAACAACTATCAGAGTCAACTGCTTTTAGCATTCAGCCGCTTGCATCTGTGCCAACAAAGGGTTTACATGTCAATTCGATAAAATCTGAAATAGAAAATCATGACGATTTGAAATTGTACTCTAGAGATACTCAGCAGGGCTTTCCACAAAACAATGCAATGATATCGCGAATCAGAAGTAATACTGCAGCCCGAAACTATCTCATTGGACCTAGGTCCATATCCATATCTGCCAAAAAATCTAAGAAATTTGACGGAAGGTTTAAAAATATCACACACAAGCAAATCGATGTGAAGTCTGCTGCGGAATCTTTAGCATCAAAAGAAGCACAAGAGGAGATTTTAAGATATGAGGAAATGAAGAATGAGGCGACTTGTGGTCTTGATGAGTTATACAATGAAATACGACCAGCCATTGAAGAACATGAGAGGGATAGCCAAGACAGTGTATCCACGATTGTAGCCGAGAAGTGGATTGAAGCTTGCTGTTCAAAATTGAAGGCGGAGTTTGATCTTTACTCCTCCGTTGTCAAGAATTTTGCCTGCACTCCTCTCAAGCCTCGTGGCCTTCCGAATCCTTCTTCTTCTCAAGTTGATAATGAAAACGAAAAGAAGTTGTTGACGAATTGA 1497 0.4081 MDPHVEELPQYIHITQNDFLNRRHVKQKEEDIAICECKHDSSDPDSACGDGCLNVLTSSECTPGYCPCGIFCKNQRFQKCEYAKTKLFQTEGRGWGLLADENIKAGQLIIEYCGEVISWKEAKRRAQAYETQGLKDAFIICLNASESIDATRKGSLGRFINHSCQPNCETRKWNVLGEIRVGIFAKQDIPVGAELAYDYNFEWFGGAKVRCLCGAAKCSGFLGAKSRGFQEDTYLWEDDDERYTVEKIPVYDSAEDEPPSKVLRSLHSDIPGMQVNGKTEHSMDVVIKPEQLSESTAFSIQPLASVPTKGLHVNSIKSEIENHDDLKLYSRDTQQGFPQNNAMISRIRSNTAARNYLIGPRSISISAKKSKKFDGRFKNITHKQIDVKSAAESLASKEAQEEILRYEEMKNEATCGLDELYNEIRPAIEEHERDSQDSVSTIVAEKWIEACCSKLKAEFDLYSSVVKNFACTPLKPRGLPNPSSSQVDNENEKKLLTN 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0100 498 Pfam SET domain 94 200 IPR001214 GO:0005515
Lele46g0100 498 SMART set_7 83 206 IPR001214 GO:0005515
Lele46g0100 498 FunFam Histone-lysine N-methyltransferase 1 235 - -
Lele46g0100 498 PANTHER SET DOMAIN PROTEINS 6 439 - -
Lele46g0100 498 SMART PostSET_3 207 223 IPR003616 -
Lele46g0100 498 Gene3D SET domain 2 237 IPR046341 -
Lele46g0100 498 SMART shorttest3 30 82 IPR006560 GO:0005634|GO:0018024
Lele46g0100 498 ProSiteProfiles AWS domain profile. 30 81 IPR006560 GO:0005634|GO:0018024
Lele46g0100 498 ProSiteProfiles SET domain profile. 83 200 IPR001214 GO:0005515
Lele46g0100 498 SUPERFAMILY SET domain 9 220 IPR046341 -
Lele46g0100 498 MobiDBLite consensus disorder prediction 477 498 - -
Lele46g0100 498 ProSiteProfiles Post-SET domain profile. 207 223 IPR003616 -
Lele46g0100 498 MobiDBLite consensus disorder prediction 478 498 - -
Lele46g0100 498 Pfam AWS domain 43 80 IPR006560 GO:0005634|GO:0018024
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0100 Lele-ChrLele46 581163 584380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0100 65 222 C2H2 Transcription Factor Family AT2G23740 33.702 7.36e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele46g0100 SET 1.9e-18 No_clan