Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0083 ATGGTTCAGTCCAATGGTCCTCCGGCGCCGGTGACACCTGTGGCAGCGGCATTGTCTTCGGGACAGTTCGCAAATATGTCATTGTACGTTGGTGATCTCGACCCGAATGTGAATGAAGGTCAGCTATATGATCTGTTCAACCAAGTGGCGAATATTGTCTCCATTAGGGTTTGCAGGGATCAGACCAGGCGATCCTCTCTCGGTTACGCCTATGTCAACTTCGGCACAGCCGAGGATGCGGCTAATGCCATGGAACTTCTCAATTTTACCCCACTTAACGGGAAACCGATTCGTATCATGTTCTCTCATAGAGATCCTAGCATTAGGAAAAGTGGATATGGTAATGTGTTCATTAAGAACCTGGACACATCGATCGATAACAAGGCATTACAAGACACTTTTGCTGCCTTTGGAACTGTACTTTCCTGCAAGGTAGCTGTTGACATCTCTGGACAGTCAAAAGGTTACGGTTTTGTACAGTTTGACAATGAAGAAGCTGCGCAAAATGCCATCAAACAGCTGAATGGCATGTTGATAAATGACAAACAAGTTTACGTTGGACTCTTTGTTAGGCGCCAGGAAAGGGCTTGTGCTGACGGATCACCAAAGTTTACTAATGTTTATGTGAAAAATTTCTCTGAAACATATACTGATGAGGACCTCAAACAGCTATTTGGGCCATATGGTGCAATAACTAGTGCTGTTGTCATGAAAGATGTGAATGGGAAGTCTCGATGTTTTGGCTTTGTTAATTTCCAAAGCCCAGAATCAGCAGCTGCTGCAGTTGAGAGGTTGAATGGAACCACTACCAATGATGATAACGTATTATATGTAGGGAGAGCTCAGAAGAAAGCAGAAAGAGAGTCAGAGCTGAAGGCCAAATTTGAGCAGGAACGGATTAGTCGATATGAGAAATTACAAGGTGCTAATTTATACTTAAAGAATCTCGATGATAGCATCAATGATGACAAACTGAAGGAGCTGTTTTCTGAGTTTGGAACTATTACATCATGCAAGGTTATGCTTGATTCACATGGGAATAGCAAGGGGTCTGGTTTTGTGGCTTTTTCTACGCCTGAGGAAGCAAGTAAAGCTTTGAACGAAATGAATGGGAAAATGGTAGGTCGAAAACCTCTTTATGTTGCTGTGGCCCAACAGAAAGAAGAGAGGAAGGCCCTGCAGGCTCATTTTGCTCAAATTCGTGCACCTGGTAGAATTGCACCTTTGCCTACTGGAATTCCTGGATATCATCCTGGGGCACCTAGACTTGCCCCCCAGCAGTTGTACTATGGTCAGGGAACACCTGGTATGATGCCACCTCAGCCAGCTGGATTTGGTTTCCAGCAACAACTGTTGCCCGGAATGCGTCCTAGCATTGCTCCAAATTTCATTATGCCATACAACCTTCAAAGGCAGGTTCAACCTGGTCAAAGGATGGGTGTTCGACGGGGTGGAAATTTCCAACATGTGCAGCAAAACCAGATGATGCATCGAAGCTCCAATCAAGGGTTTAGATATATGGGCAACACTCGAAATGGCATGGACCCATCTATTGGTCCCCAAGGCGTAGTGAGTCCGATGATGCCATTGCCCTTTGATGGTTCTGGGGTTACTTCAGCTCCCATTGATAATCTGCGGCCTGGTGCACTTTCTACAACGCTTGCCTCAGCTTTGGCCTCTGCTACACCAGAAAATCAGCGCTTGATGCTGGGTGAACATCTATATCCTCTTGTACAGCGTCTTGCCCCAAATCATACAGCAAAAGTGACCGGGATGTTGTTGGAAATGGACCAATCTGAGGTTATCCATCTCATTGAATCTCCTGAAGACTTGAAAATAAAGGTGTCTGAGGCAATGCATGTCTTGCATGAAGCTGCATCGGGCACTGAAGTTGGTGAACAGCTCGGCTCACTGTCGCTGAATGAATGA 1929 0.4552 MVQSNGPPAPVTPVAAALSSGQFANMSLYVGDLDPNVNEGQLYDLFNQVANIVSIRVCRDQTRRSSLGYAYVNFGTAEDAANAMELLNFTPLNGKPIRIMFSHRDPSIRKSGYGNVFIKNLDTSIDNKALQDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNEEAAQNAIKQLNGMLINDKQVYVGLFVRRQERACADGSPKFTNVYVKNFSETYTDEDLKQLFGPYGAITSAVVMKDVNGKSRCFGFVNFQSPESAAAAVERLNGTTTNDDNVLYVGRAQKKAERESELKAKFEQERISRYEKLQGANLYLKNLDDSINDDKLKELFSEFGTITSCKVMLDSHGNSKGSGFVAFSTPEEASKALNEMNGKMVGRKPLYVAVAQQKEERKALQAHFAQIRAPGRIAPLPTGIPGYHPGAPRLAPQQLYYGQGTPGMMPPQPAGFGFQQQLLPGMRPSIAPNFIMPYNLQRQVQPGQRMGVRRGGNFQHVQQNQMMHRSSNQGFRYMGNTRNGMDPSIGPQGVVSPMMPLPFDGSGVTSAPIDNLRPGALSTTLASALASATPENQRLMLGEHLYPLVQRLAPNHTAKVTGMLLEMDQSEVIHLIESPEDLKIKVSEAMHVLHEAASGTEVGEQLGSLSLNE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0083 642 SUPERFAMILY PABC (PABP) domain 492 626 IPR036053 GO:0003723
Lele46g0083 642 FunFam Polyadenylate-binding protein 19 114 - -
Lele46g0083 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Lele46g0083 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Lele46g0083 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Lele46g0083 642 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 273 IPR000504 GO:0003723
Lele46g0083 642 SMART rrm2_1 115 187 IPR003954 GO:0003676
Lele46g0083 642 SMART rrm2_1 310 382 IPR003954 GO:0003676
Lele46g0083 642 SMART rrm2_1 27 100 IPR003954 GO:0003676
Lele46g0083 642 SMART rrm2_1 206 278 IPR003954 GO:0003676
Lele46g0083 642 FunFam Polyadenylate-binding protein 292 396 - -
Lele46g0083 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 191 IPR000504 GO:0003723
Lele46g0083 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Lele46g0083 642 Pfam Poly-adenylate binding protein, unique domain 558 622 IPR002004 GO:0003723
Lele46g0083 642 Gene3D - 549 627 - -
Lele46g0083 642 CDD RRM4_I_PABPs 308 385 - -
Lele46g0083 642 FunFam Polyadenylate-binding protein 115 188 - -
Lele46g0083 642 FunFam Polyadenylate-binding protein 547 628 - -
Lele46g0083 642 PANTHER RNA BINDING PROTEIN 26 88 - -
Lele46g0083 642 SMART poly_2 562 625 IPR002004 GO:0003723
Lele46g0083 642 Gene3D - 295 399 IPR012677 -
Lele46g0083 642 Gene3D - 193 294 IPR012677 -
Lele46g0083 642 Gene3D - 22 114 IPR012677 -
Lele46g0083 642 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 27 622 IPR006515 GO:0003723
Lele46g0083 642 CDD RRM3_I_PABPs 204 284 - -
Lele46g0083 642 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 550 627 IPR002004 GO:0003723
Lele46g0083 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Lele46g0083 642 Coils Coil 278 298 - -
Lele46g0083 642 FunFam Polyadenylate-binding protein 195 291 - -
Lele46g0083 642 CDD RRM2_I_PABPs 112 187 IPR045305 -
Lele46g0083 642 SUPERFAMILY RNA-binding domain, RBD 27 193 IPR035979 GO:0003676
Lele46g0083 642 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Lele46g0083 642 SUPERFAMILY RNA-binding domain, RBD 204 388 IPR035979 GO:0003676
Lele46g0083 642 CDD RRM1_I_PABPs 27 106 - -
Lele46g0083 642 Gene3D - 115 188 IPR012677 -
Lele46g0083 642 SMART rrm1_1 115 187 IPR000504 GO:0003723
Lele46g0083 642 SMART rrm1_1 206 279 IPR000504 GO:0003723
Lele46g0083 642 SMART rrm1_1 27 100 IPR000504 GO:0003723
Lele46g0083 642 SMART rrm1_1 310 382 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0083 Lele-ChrLele46 473336 477113 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0083 25 631 Eukaryotic Initiation Factors Gene Family AT1G71770 60.323 0.0 725