Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele46g0021 ATGACAGATTTTCAACCGCTACAACAGAAGCCTGACTCCACCGATGCCCATGCTGAGTTTGAACCTGGGCTGGAGCACTTTATGCGGGGCCACTTGGACGATTGCATGTCCTTTGCTTCGTGTAGTTCTGCCCGAACTCAGGATGGTGAGGATGATGAGGGTGATCAGCTAGTTAGGAGGAGAAGAAGATCTGATCTTGAGGGGGATGATTTAGCAGAGTCATCAGCCGCACGCCGCCGCCACTCACGGATTTTGAGCAGATGGGCTGCCCACCAGGCCCAAGAGATGATAACCACAATTGAGAGAAGGAATCGGGAGTCTGAGTTGATGGCACTTGCGGGACTACACACAGTCTCGATGTTGGACTCCTCTTTCTTGAGGGGATCACAGACTCCAACTTCTGGCCAGGAGGGGGCTGTAGAGAGGCCCAGCACTCAGGCTTCTGCAATTCTTCAGATGTGGCGTGAATTGGAGGATGAACACTTACTTAATCGGGCGCGTGGAAGAATGAGGGAAAGGTTGCGTCAGCAAAGGGTTGCCGACTCTAATGCCAATGGATCAAGTACCATGTCGGATAGCCGGGGAAGTGAGAACCAGGGGAGTTTAGTGGATGCAAGTGAAAGTGAAAATGATTATGGGACCTGGTCACATGATCAGATTCAATCACAGCATGACAATGATGACCGTAATGGGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTTCGACAGATTGTGCGGGGATGGATGGAAAGTGGCATCAGTGATCATTCGTCTAGTGCAAGTCAGAGAAACAATAATCGCAGAGCAGAGTGGCTTGGTGAAACAGAGCGTGAAAGAGTAAGAATTGTCAGGGAGTGGGTGCAAATGACGAGTCAGCAGCGAGGTTCTCGTGGGAGCCGGAGGGATAGTCAAGTCACTGAAAGTGGTTCTCGAGTTGAGGGAGCCCGTGATGGATTGTTAACTGATCATGATGAGGGCCAGCCAGAGCATGTACGCAGAGATTTATTGAGGTTGCGTGGAAGACAAGCTCTGGTTGATTTGCTTGTGAGGGTTGAAAGGGAAAGACAGAGAGAGCTGCAGGGCTTGTTGGAGCACCGCGCTGTTTCTGATTTTGCTCATCGTAATCGCATTCAGTCATTACTCAGAGGTAGATTCCTCCGAAATGAAAGAACTATAGAAGATGAGAGGCCTCCTTCTGTGGCTGCAAATGAATTAGTTCAGTTAAGACAACGTCACACAGTCTCTGGTTTAAGAGAAGGGTTTCGCTCAAGATTAGAAAATATTGTTCGTGGTCAAGCTAGCAGCAATTCTGATGCCACATCTAATAGTAATGCCAGTGAAACTAGAAGTGATGTGAACCAAGAAAACATTTCCATAGATGCCCAGCATGAAAGTTATGAACAAGGGCCGATTAGGAGCGTGGAAACTGATGTGCAGCAGTTGACTGATCAAACAAGAACTTTTGAAAGTAGCACTAGTGAGAATATAAGTTGGCAAGAAACTAGTAATCAAGGAGGGAATTGGCAGGAACAAGTTACTGAAGATGGTCGTGGAAATTGGCAACGGAGAGCTTATGGTCCATTGAATCAGTTAAGAGACGGAAGAGCTGTTAGTGATTGGCGTCAGGATTCTCCGATAAATGTAGAAGGGGAAGATGCTCATCCACGAGATGCTCGGGAAATTTGGCGTGAGGATAATTCAAGAGAAGCTGTTGGTAATTGGTCTGAAGAACCTTCTGGTCCTCCAAGGAATCGACGTGGTGTTCCTTTTAGGAGATTCAATAGATTTCATCCACCTGATGATGATAATGTATATAGTATGGAGCTTAGAGAACTTTTGAGCAGGAGAAGTGTTTCCAATCTTCTTCGCAGTGGTTTCCGGGAAAGTCTGGACCACTTAATCCAGTCATACGTGGAAAGGCAAAATCGTGCACCTATTGACTGGGATTTGCATAGAAACTTGCCAACACCAACTCCTGCCTCACCTGATAGGGATCCTGAACAACAGGCAGATGAACGTAGTGGGGTTCAACATGTCGCCATTAATGGCCCTTCTCTAGTGTTGCCATCTCCACCAGTTCCTCCACCTCAACCACTTTGGCACCAGGACTTGCATCAGACTGGATGGTCTCGCCATAGCATGCATCGATCTGAAATTGAATGGGAGATAGTCAATGATTTGAGATCAGATATGGCAAGACTTCAGCAAGGCATGAATCACATGCAGAGGATGTTGGAGGCTTGCATGGATATGCAACTGGAGTTACAGCGCTCTGTCAGACAGGAAGTGTCTGCAGCGCTGAATCGTTCAGCGGGGGAAAGTGGAATGGGGGCGGAGACATCTGAGGATGGGTCTAAATGGGGCCATGTGAAAAAAGGAACTTGTTGTGTTTGTTGTGATAGCCATATTGATTCGCTCTTGTACAGATGTGGACACATGTGCACTTGTTCAAAATGTGCCAATGAATTAGTTCGTGGTGGAGGGAAGTGCCCTTTATGCCGAGCACCTATTGTTGAGGTGATCCGAGCATATTCCATTATGTAA 2565 0.4745 MTDFQPLQQKPDSTDAHAEFEPGLEHFMRGHLDDCMSFASCSSARTQDGEDDEGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAAHQAQEMITTIERRNRESELMALAGLHTVSMLDSSFLRGSQTPTSGQEGAVERPSTQASAILQMWRELEDEHLLNRARGRMRERLRQQRVADSNANGSSTMSDSRGSENQGSLVDASESENDYGTWSHDQIQSQHDNDDRNGSSREQSPDLGEVERERVRQIVRGWMESGISDHSSSASQRNNNRRAEWLGETERERVRIVREWVQMTSQQRGSRGSRRDSQVTESGSRVEGARDGLLTDHDEGQPEHVRRDLLRLRGRQALVDLLVRVERERQRELQGLLEHRAVSDFAHRNRIQSLLRGRFLRNERTIEDERPPSVAANELVQLRQRHTVSGLREGFRSRLENIVRGQASSNSDATSNSNASETRSDVNQENISIDAQHESYEQGPIRSVETDVQQLTDQTRTFESSTSENISWQETSNQGGNWQEQVTEDGRGNWQRRAYGPLNQLRDGRAVSDWRQDSPINVEGEDAHPRDAREIWREDNSREAVGNWSEEPSGPPRNRRGVPFRRFNRFHPPDDDNVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVERQNRAPIDWDLHRNLPTPTPASPDRDPEQQADERSGVQHVAINGPSLVLPSPPVPPPQPLWHQDLHQTGWSRHSMHRSEIEWEIVNDLRSDMARLQQGMNHMQRMLEACMDMQLELQRSVRQEVSAALNRSAGESGMGAETSEDGSKWGHVKKGTCCVCCDSHIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIM 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele46g0021 854 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 110 854 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 490 528 - -
Lele46g0021 854 ProSiteProfiles Zinc finger RING-type profile. 802 841 IPR001841 -
Lele46g0021 854 MobiDBLite consensus disorder prediction 168 245 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 221 245 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 656 682 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 125 146 - -
Lele46g0021 854 Coils Coil 731 751 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 435 461 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 296 335 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 46 78 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 259 275 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 179 220 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 490 522 - -
Lele46g0021 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 784 852 IPR013083 -
Lele46g0021 854 MobiDBLite consensus disorder prediction 257 277 - -
Lele46g0021 854 CDD mRING-HC-C3HC5_NEU1 801 841 - -
Lele46g0021 854 MobiDBLite consensus disorder prediction 44 78 - -
Lele46g0021 854 Pfam Zinc finger, C3HC4 type (RING finger) 799 846 - -
Lele46g0021 854 SUPERFAMILY RING/U-box 801 847 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele46g0021 Lele-ChrLele46 97542 102457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele46g0021 779 848 C3H Transcription Factor Family AT3G06140 37.143 5.47e-07 50.8