LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele46g0008	ATGCTTCCTTCCATTGCGAACAAGGTGCACCCAGTAATCCTGATTCACCAGCTCAGTTCCTCTATCGCTCAAATCGAAGGAGGGAAACTGAGGCGAGGGAATGGGAATCGTAGAATTGATTGCACAGATGAATCCACGTCTTTCCGAAGCAAAATCCGAACCTCTTTTAACAAGTTAGGTTCGCTCCGAGCTATGACCTTGAAGACGATGATTCCCATTAGCTGCTGCGTCATTCTCTCACTATGGCTCCTCTGCTTCCCTTTCTCTCCGCCTGCCATCAAAGCTGCCTTCAACCCTCAACATGTGGTTATGGATGTTCATAGGAGAATCAACGCGTCTCTCTCCAGAAGACAACTCCTCTCCGTTGACAAATCCGACCAAGCTCCAGGCTGCCTCACCGGCAACCCCATCGACGACTGCTGGCGGTGCGATCCCAACTGGGCCACCGACCGCCAGAAGCTAGCCGACTGCGGTATTGGGTTCGGCACCGACGCTGCCGGCGGCAAGGGCGGCCAGTTCTACATCGTCACCGACCCTTCCGATAACGACCCGGTGAACCCAGCTCCGGGAACTCTTCGGCACGCCGTAATCCAAGACGTACCCCTCTGGATCGTCTTCTCCGGCAACATGATGATCACCCTGAAGCACGAGCTCATGTTCAACAGCTTCAAGACCATAGACGGACGAGGCGCCAGCGTCCACATCACCGGCAAAGGCTGCATCACCCTGCAGTACGTCGTCAACGTCATCATCCACAACGTGCACATCCACCACTGCAGGCCATCGAGCAAAACAATGATACGGGCGAGTCCAACAAAGGTAGGATTGAGAGGGGGATCGGACGGTGACGGGGTGTCCATCTATGGGTCAGAGAAGATCTGGATAGACCATTGCACGCTGGCGTATTGCACGGACGGCCTTATAGACGCGATAATGGGGTCGACGGGGATAACGATATCGAACAACCATTTCTCTCATCACGACAAGGTGATGCTGCTGGGGCACGACGATAGGTATGTAGCGGATAGGAGGATGCAGGCGACAGTAGCATTCAATCACTTCGGGGAGAAGCTGGTGCAGCGGATGCCACGGTGCAGACACGGGTACGTGCACGTGGTGAACAACGATTACACGCAGTGGGAGATGTACGCCATCGGCGGCAGTGCGGCGCCCACCATAAACAGCCAGGGTAACCGCTACACTGCTCCGGCCAATGCTAATGCTAAAGAGGTGACGAAGCGGGTGGAGACGGATGAGAGAGAGTGGGCGAGTTGGAATTGGAAGACGGAGGGGGACTTAATGGTGAACGGAGCATACTTCGTGGCATCGGGCGATTGGGTGAGCACCCAATACGAGCAGGACTCGTCTCCGCCGCCCCAATCCGCCCTTCACATCGACCTCCTCACCGTCAACGCCGGCGTCTTCAACGATCCCAGGGAAAGTGGGGATATATATCCGGCGTTCCTGGAGAGCATGCCCAGGCATGGCAGCACCCATAATGCTTCACCGCCCTCCGCCCCCTTTTTGTCTGTTATCTTCATTCTCTTCACCTCTGCTTTTCTACAATATTGTTAG	1575	0.553	MLPSIANKVHPVILIHQLSSSIAQIEGGKLRRGNGNRRIDCTDESTSFRSKIRTSFNKLGSLRAMTLKTMIPISCCVILSLWLLCFPFSPPAIKAAFNPQHVVMDVHRRINASLSRRQLLSVDKSDQAPGCLTGNPIDDCWRCDPNWATDRQKLADCGIGFGTDAAGGKGGQFYIVTDPSDNDPVNPAPGTLRHAVIQDVPLWIVFSGNMMITLKHELMFNSFKTIDGRGASVHITGKGCITLQYVVNVIIHNVHIHHCRPSSKTMIRASPTKVGLRGGSDGDGVSIYGSEKIWIDHCTLAYCTDGLIDAIMGSTGITISNNHFSHHDKVMLLGHDDRYVADRRMQATVAFNHFGEKLVQRMPRCRHGYVHVVNNDYTQWEMYAIGGSAAPTINSQGNRYTAPANANAKEVTKRVETDEREWASWNWKTEGDLMVNGAYFVASGDWVSTQYEQDSSPPPQSALHIDLLTVNAGVFNDPRESGDIYPAFLESMPRHGSTHNASPPSAPFLSVIFILFTSAFLQYC	524

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele46g0008	524	FunFam	Pectate lyase	134	476	-	-
	Lele46g0008	524	Gene3D	-	134	476	IPR012334	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	217	233	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	383	402	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	181	206	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	281	302	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	157	174	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	361	380	IPR018082	-
	Lele46g0008	524	PRINTS	Pollen allergen Amb family signature	425	449	IPR018082	-
	Lele46g0008	524	SMART	amb_all	209	406	IPR002022	-
	Lele46g0008	524	Pfam	Pectate lyase	216	396	IPR002022	-
	Lele46g0008	524	SUPERFAMILY	Pectin lyase-like	128	472	IPR011050	-
	Lele46g0008	524	PANTHER	PECTATE LYASE 18-RELATED	100	476	IPR045032	GO:0030570

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele46g0008	Lele-ChrLele46	45071	49063	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele46g0008	70	521	Polysaccharide Lyase	AT3G53190	57.380	0.0	527