Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1387 ATGGATTTCGCGCTCGGCAAATCTTTCAAGTCCTATGGTTCGCTCAAGCGTTCCCCGAAGTTTTCCTCAGGGGACAGCGCTGACGCTGGGCGAGAAGAAATGCCCATCCTCCTTGAACAAGATCCATCCTCTCCCGAACGTGAACGTAATCTTCCTCAACCCCACGCTGCTCCTTCCTCCTCCATGACCTCCGCCGACATACCCACCTACAGCGGAGAGGTGATCGTCAAGATCGATGACAGCGACTCCAAATCCTCCAAAGCCGCCTCCAGCTCCCAGGGCGGCGACTTCTGGACAGCAGGTGACATCACCCCCACCATGCATGGACAGAGTTTCGATTTCCAGCAACCTGGCCCCAAACCGGAGGACCCTCCCTCCAGGCTCATTGGTAAATTCTTGCACAGACAGAAGCTCTCCGGCGACATGTCCCTCGATATGGATTTAGAAATGGACGAGCTCCAACAACATGATCCTTACAAGACGTATTTGCCTCCGCTCGACGAGAATGCGTCGGTGAGTTTCTCCAGGGAGTACAAAGTCTCCTTCGAAGAACCGTCTCCTAATTCCGCCGACCAACCGGGCGATTCCGTTCGACGAAGGTACAAGGATACGCCGATCATGGAGGAATTCCCGAAACCACCGCAGCCCGACCGTCGCGGCTCAGCTCAGAATATTCATCCGGCAAACGGAGACGGTGAGGTTGTGAGGTGCAACTCAAACGCGTCTTTCGAGAGGAACCTTTCGTTGCAGAGGAGGTCCGGTTTGCTCAGGGCGAAAACCATCAAATCAAGACTGATCGACCCGCCAGATGAGCCCGATCGGAGGTCGGGCCGGATTCAGAGATCGGGGCAGATGCTGTCGGGTTTGCAGCCAGGGAATAATAAGAAAGGGGATGAGGAGGAGGAAGACCCATTTTTGGAAGAGGATCTTCCGGATGATATAAAGAAGACCAAATTCAGCATTTGGGTTCTACTAGAATGGTTGAGTTTGATTTTAATTGTGGCGGCATTGATAACCACTCTCTGTATCCCATTCTTGAGGGGAAAGAATCTGTGGAAGCTCAAGTTATGGAAATGGGAGGTGATGGTTTTGGTTCTGATTTGTGGCAGGTTAGTTTCGGACTGGGTGATTCGAATTGCAGTGTTCTTCATCGAAAGGAATTTCCTTCTACGTAAGAGGGTGCTGTACTTTGTTTACGGGTTGAAGAAGGCAGTTCAAAATTGCCTCTGGTTGGGCCTCGTTTTACTTGCATGGCACTCTCTATTCGATCAAAAAGTGGAAAGGGAGACAAAAAACGACTTCCTAGAATATGTGACCAAGGTGTTGATCTGCTTCTTGGTGGGGACTCTTGTGTGGCTGGTGAAGACTCTGATGGTGAAGGTTCTGGCTTCTTCGTTCCATGTGAGCACCTACTTCGACAGGATACAGGAATCGTTGTTCAATCAGTACGTGATCGAAACACTGTCGGGGCCGCCATTGGTGGAGATCCAGAGGCAGGAGGAGGAGGAGGAGAAGCTGGCGGAGGAGGTGATGAAGCTTCAGAATGCAGGAATCACCATACCTCCAGATCTGAGGGCGTCGGCGTTCTCTTCTCTGAATAATAAGAGCCCGAAGGTGAACAGAAGTGGGATGCTTCTCAAGAGTCCGCAGCTGAAAAGTGGCAAGTTGTCTCGACCACTTGCCAACAAGAAATCAGATGAAGGGATACCTATTGATTACTTACATAAGTTGAATCCCAGGAATGTGTCGGCATGGAATATGAAAAGGCTGATGAATATTGTGCGACACGGTGCTCTTTCCACGCTTGACGAGCAGATCCAAGGTTCAACCTATGAAGATGAACATATCACGCAAATCCGGAGTGAGAACGAGGCCAAAGCCGCTGCCAAAAAGATATTTCAGAATGTCACCAGGCGCGGATCCAGGTTCATATACCTAGAGGACTTGCTGCGCTTTTTGAGAGAAGATGAAGCTGTCAAAACCTTTAGTCTATTCGAAGGAGCGCCTGATAGCGGCAAAATCAGTAAATCAGCCTTGAAGAACTGGGTGGTGAACGCGTTCAGAGAAAGGAGAGCGCTTGCTTTGACGTTGAATGACACGAAAACGGCAGTAAACAAACTCCACCGAATGCTCAACTTTTTAGTGGCCATTGTCATTCTCATTATTTGGCTCTTAATACTGGAAATTGCCACCAGCAAATTTCTTGTCGTCGTCAGCTCCCAGCTCGTTCTGGCTGCATTCATATTTGGAAATACCTGCAAGACCGTATTCGAAGCCATCATTTTCTTATTCGTCATGCACCCTTTTGATGTGGGAGATAGATGTGAAATTGATGGCATTCAGATGATTGTGGAGGAAATGAACATACTGACAACCGTATTTCTGAGATACGACAATTTGAAGGTAATGATCCCTAACAGTGTTCTTGCTACAAAGGCCATATATAATTTCTACCGGAGTCCCGACATGGGGGATGCCGCGGAGTTCTTAGTACATTTCGGTACCCCACCCGAAAAGATCACACTTATCATAAACAAAATAAGGAGTTACATCCAAAGCAAGAAGGAGTTCTGGGATGCCTCGCCTATGATAGTGTACAAGGACGTGGAGCAACTGAACATGATAAAACTAGCAGTATGGCCAAGTCACAGAATGAACCACCAAGACATGGGCGAAAGGTTCGTCAGAAGATCGCTTCTGATTGAAGAGATGATCAAGATCTTCCGCGAGATCGACATTCAATTCCGGCTGCTTCCCCTCGACGTCAGCGTTCGAAGCGCGCCGACCACCTCCGAACGCCTTCCTCCTAGTTGGGTCACTGCGACAACGGGGGTTATCCTCTGGGACTGGGAATACAAAGTTTTCCAATCAAAATTTATGCCCCACTCAGATGATATAAGCATTGTGACTTGTGCTGCTGATGGGCAGTTTGATCTGAGAACTGGGGCTGCAACAGAACTTTTTGCTTGCCAGCCAATTAATGATAGAAGGAGTTTCATGCCAGGCATCCAGCTAAATGCAATTGCAATTGATCCAAGGAATCCGAATCTCTTTGTGGATGCTGGATCAGATGATTTCGGTCAACCTTCTAACTTCTTTTGCCCTCCACCCTTGATTGTGAAGGGTGTTCATTTTTTGGGGCCTAAATGTGAGTATGTGGTGAGTGGGTCAGACTGCGGCCGGATTTTCATCTGGAGAATGAAGGATGGAAAGCTTATTCGTGTCATGGAAGCTGATAAGCATGTGGTGAATTGCATTGAATCTCATCCTCAAACAATGGTTCTTGCAAGCAGTGGAATTGAGAATGACATTAAGATATGGACTCCAAAGGCCTTAGAGAAAGCTACTTTACCCAAAAACGTTGAGCAGGGATGA 3375 0.4824 MDFALGKSFKSYGSLKRSPKFSSGDSADAGREEMPILLEQDPSSPERERNLPQPHAAPSSSMTSADIPTYSGEVIVKIDDSDSKSSKAASSSQGGDFWTAGDITPTMHGQSFDFQQPGPKPEDPPSRLIGKFLHRQKLSGDMSLDMDLEMDELQQHDPYKTYLPPLDENASVSFSREYKVSFEEPSPNSADQPGDSVRRRYKDTPIMEEFPKPPQPDRRGSAQNIHPANGDGEVVRCNSNASFERNLSLQRRSGLLRAKTIKSRLIDPPDEPDRRSGRIQRSGQMLSGLQPGNNKKGDEEEEDPFLEEDLPDDIKKTKFSIWVLLEWLSLILIVAALITTLCIPFLRGKNLWKLKLWKWEVMVLVLICGRLVSDWVIRIAVFFIERNFLLRKRVLYFVYGLKKAVQNCLWLGLVLLAWHSLFDQKVERETKNDFLEYVTKVLICFLVGTLVWLVKTLMVKVLASSFHVSTYFDRIQESLFNQYVIETLSGPPLVEIQRQEEEEEKLAEEVMKLQNAGITIPPDLRASAFSSLNNKSPKVNRSGMLLKSPQLKSGKLSRPLANKKSDEGIPIDYLHKLNPRNVSAWNMKRLMNIVRHGALSTLDEQIQGSTYEDEHITQIRSENEAKAAAKKIFQNVTRRGSRFIYLEDLLRFLREDEAVKTFSLFEGAPDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIVILIIWLLILEIATSKFLVVVSSQLVLAAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDGIQMIVEEMNILTTVFLRYDNLKVMIPNSVLATKAIYNFYRSPDMGDAAEFLVHFGTPPEKITLIINKIRSYIQSKKEFWDASPMIVYKDVEQLNMIKLAVWPSHRMNHQDMGERFVRRSLLIEEMIKIFREIDIQFRLLPLDVSVRSAPTTSERLPPSWVTATTGVILWDWEYKVFQSKFMPHSDDISIVTCAADGQFDLRTGAATELFACQPINDRRSFMPGIQLNAIAIDPRNPNLFVDAGSDDFGQPSNFFCPPPLIVKGVHFLGPKCEYVVSGSDCGRIFIWRMKDGKLIRVMEADKHVVNCIESHPQTMVLASSGIENDIKIWTPKALEKATLPKNVEQG 1124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1387 1124 MobiDBLite consensus disorder prediction 195 215 - -
Lele45g1387 1124 MobiDBLite consensus disorder prediction 263 278 - -
Lele45g1387 1124 Gene3D - 768 817 IPR023408 -
Lele45g1387 1124 SMART WD40_4 1069 1108 IPR001680 GO:0005515
Lele45g1387 1124 SMART WD40_4 1026 1066 IPR001680 GO:0005515
Lele45g1387 1124 SUPERFAMILY WD40 repeat-like 944 1109 IPR036322 GO:0005515
Lele45g1387 1124 Coils Coil 493 516 - -
Lele45g1387 1124 FunFam Predicted mechanosensitive ion channel 768 817 - -
Lele45g1387 1124 MobiDBLite consensus disorder prediction 85 113 - -
Lele45g1387 1124 MobiDBLite consensus disorder prediction 54 68 - -
Lele45g1387 1124 SUPERFAMILY Sm-like ribonucleoproteins 758 817 IPR010920 -
Lele45g1387 1124 MobiDBLite consensus disorder prediction 260 307 - -
Lele45g1387 1124 Pfam Mechanosensitive ion channel 710 914 IPR006685 GO:0016020|GO:0055085
Lele45g1387 1124 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 49 938 IPR016688 -
Lele45g1387 1124 MobiDBLite consensus disorder prediction 1 134 - -
Lele45g1387 1124 Gene3D - 938 1110 IPR015943 GO:0005515
Lele45g1387 1124 MobiDBLite consensus disorder prediction 177 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1387 Lele-ChrLele45 23400413 23408809 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1387 73 944 Mechanosensitive Ion Channel Family AT1G78610 55.653 0.0 899