Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1375 ATGCAAAGCCTGTCCGAGAGACTGAGGCCCCTTGTGGGTTTGAATGGCTGGGACTACTGTATTCTTTGGAAACTAAGCCAAGACCCAGGGTTTCTTGAATGGATGGGATGCTCTTGTGCTGGGACTGAATGTAGCCAAAATGGTGGAGAAGAACTTCTTTTCCCTGTTTCTTCAGCTGCTCCATGCAGAGATACTATGTTTCCGCATCCCAGAACAAAGTCCTGTGATTTACTTTCCCATCTTCCCACTTCCATAAGCTTAGATTCTGGGATTCATGCAGAGACACTATTATCCAATCAACCCAATTGGGCGAACTATTCCAATAGTTTAGACCCAAACACTTTGGAAGAAACAATTGGGACCCATGTTTTGATTCCTGTGCCTGGAGGACTAGTTGAGCTGTTTGTGATAAAGCAAGTGCCGGAAGATCAACAGGTGGTCGATTTCATCACAGCCCACTGCAATATGGATATGAGCTTCGACATTGACGTGAATTCGATCAGTCATATGCAACCAAATATTAATCCACTTTTAGGAGATGAGAATGATGGGAATGCAATAGCATCAGAGACTTCAAGTCTTCCCCCACATGATCAATGCAATTCGCCATTGAACTTGATGCAGCAATATAGCTACAGCAACCCACATAATAACGGGAAGAAAAGTGACGGCATTTTTGAAGATTCCCAAGGTTCATTCCTATTGAACAAAAGCCAGCAATTTGGGGAGCCTATTGAGAAGAAGGAGCACCAAGGGGACGATAAGGACTTGATCAAACACCTAGTGGCTAGGTCAGATTCGATGTCAGATTGCAGCGATCCGAACGAAGATGAGGATGATGGCAAGTATAGGCGAAGGAACGGGAAAGGGAATCAATCGAAGAACCTTCTGGCAGAGAGAAGGAGGAGGAAGAAGCTGAATGACAGCTTGTATAATCTTCGGTCTTTGGTTCCCAGAATTTCCAAGCTAGACAGAGCGTCGATTCTCGGGGACGCAATTGAATACGTGAAGGATTTGCAGAAGCAGGTGAAAGAGCTGCAAGATGAGCTCGAGGAACATTCAGAAATGGATGAACAAGAAGCACCGGATAATGTTGCTGGGGTTGAAATGGGACCAAACGCCGATCAAATGAAGACTCAAAATGGGTTTCATCTGGGGAAATCAGGGAACGGCCATATCTGGAAGCAAAAACAAGAGTTCGATGCTCCAAACGATAAGCAAACACAACAAATGGAGCCGCAAGTGGAGGTGGCAGTGATAGAAGGGAATGAATTGTATGTGAAGGTGTTTTGCGAGCACAGACCTGGAGGGTTCGCGAAACTGATGGAAGCATTCTACGCTCTGGGGTTCGAAGTCATGCATGCAACAGTGACCAGCCACAAAGGCCTCGTCTCCAATGTTTTCAAATTAGAGAAGAAAGAAGATGAAATGGTGAAAGCTGACGAGGTAAGAGAGTCATTGATGGAACTTATGAGGAACCCGTGCAGAGGGTGGAATCATGAGATGATTATCACGAGTGTGGCCAGGGAATATCATCAGCAAGAACAAGAACAACTTCAACTTCATAACCGCCACATTGCTGCTTATAATAACCCCCACCATTTACACCACATTCATACTTAG 1623 0.451 MQSLSERLRPLVGLNGWDYCILWKLSQDPGFLEWMGCSCAGTECSQNGGEELLFPVSSAAPCRDTMFPHPRTKSCDLLSHLPTSISLDSGIHAETLLSNQPNWANYSNSLDPNTLEETIGTHVLIPVPGGLVELFVIKQVPEDQQVVDFITAHCNMDMSFDIDVNSISHMQPNINPLLGDENDGNAIASETSSLPPHDQCNSPLNLMQQYSYSNPHNNGKKSDGIFEDSQGSFLLNKSQQFGEPIEKKEHQGDDKDLIKHLVARSDSMSDCSDPNEDEDDGKYRRRNGKGNQSKNLLAERRRRKKLNDSLYNLRSLVPRISKLDRASILGDAIEYVKDLQKQVKELQDELEEHSEMDEQEAPDNVAGVEMGPNADQMKTQNGFHLGKSGNGHIWKQKQEFDAPNDKQTQQMEPQVEVAVIEGNELYVKVFCEHRPGGFAKLMEAFYALGFEVMHATVTSHKGLVSNVFKLEKKEDEMVKADEVRESLMELMRNPCRGWNHEMIITSVAREYHQQEQEQLQLHNRHIAAYNNPHHLHHIHT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1375 540 Pfam Helix-loop-helix DNA-binding domain 297 340 IPR011598 GO:0046983
Lele45g1375 540 MobiDBLite consensus disorder prediction 209 228 - -
Lele45g1375 540 MobiDBLite consensus disorder prediction 185 199 - -
Lele45g1375 540 Coils Coil 329 359 - -
Lele45g1375 540 CDD ACT_UUR-ACR-like 427 491 - -
Lele45g1375 540 SMART finulus 296 345 IPR011598 GO:0046983
Lele45g1375 540 MobiDBLite consensus disorder prediction 367 388 - -
Lele45g1375 540 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 139 490 - -
Lele45g1375 540 SUPERFAMILY ACT-like 424 494 IPR045865 -
Lele45g1375 540 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 4 151 IPR025610 -
Lele45g1375 540 ProSiteProfiles ACT domain profile. 426 512 IPR002912 -
Lele45g1375 540 MobiDBLite consensus disorder prediction 175 199 - -
Lele45g1375 540 Coils Coil 470 490 - -
Lele45g1375 540 CDD bHLH_AtAMS_like 293 362 - -
Lele45g1375 540 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 292 354 IPR036638 GO:0046983
Lele45g1375 540 MobiDBLite consensus disorder prediction 264 301 - -
Lele45g1375 540 Gene3D - 280 355 IPR036638 GO:0046983
Lele45g1375 540 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 290 339 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1375 Lele-ChrLele45 23320835 23323029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1375 1 505 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G16910 47.786 2.12e-146 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele45g1375 bHLH-MYC_N 7.5e-20 CL0161