Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1350 ATGTCGAGCATCGTCAAGGAGATCCTGGCGAGCCCGATACAGATGGCGGACCAGGTGATCAAGCTGGCCGACGAAGCCCAAACATTCCGAATAGAATGTTTAGAGCTCAAGGCCAAGACGGAGAAACTCGTTGCCTTACTCCGGCAAGCCGCGAGGGCCAGCAATGACCTCTACGAGCGGCCGACACGGCGCATCATCGACGACACCGAACAAGTCCTCGAGAAGGCCTTGCAACTGGTCGACAAATGTCGCGGAAACGGCCTCATGAAACGACTCTTCACCATCATACCCGCCACGGCGTTTCGCAAGACGTCGATGCAGCTCGAGAATTCCCTCGGAGACGTGCAATGGCTCCTTCGTGTATCTATCTCCGCCAACGAACGCGACGACGAGTATCTGGGTCTACCCCCAATCGCCGCCAACGAGCCCATCTTGTGTCTAATCTGGGAACAGATAGCAATATTGCTCACGGGGTGTTCCATGGAAGATCGCTCGGACGCTGCCGCTTCCTTGGTCTCTTTAGCTCGAGACAACGACAGGTACAACAAATTGATTATTGAGGAGGGTGGTGTTCCGCCACTGTTGAAATTGTTGAAAGAAGGGCATTTAGAGGGTCAGGAAAATGCAGCGAGAGCGATTGGGTTGCTAGGGAAAGACCCAGAAAGCGTGGAACAGATTGTGAATGCTGGGGTTTGCACAGTGTTTGCGAAAGTCCTCAAAGAAGGGGAAATGAAGGTTCAATCAATGGTGGCTTGGGCTATCTCGGAATTAGCATATCATCACCCAAAGTGCCAGGATCACTTTGCTCAGAACAATTGCATACGCTTGCTCGTAAGGCATCTTGCTTTTGAGACCATCCAGGAACACAGCAAGTATACCATTCCCAGTAAACAGAACATGTCGTCGATTCATTCAGTGGTGATGGCCAGCAACGCTCAGAACCAGAACGATCATGACGATCATCATCAGATTGCTCGACCTTCGGTGAACCAATCATCGAGCCAAATGAGCAATGTAGTTACCAACACAATGGCCATGAAACAACAACCACATCAGGGCGGGAACGCAAATAAGCATGGACACGCACATGTTTCAATCGCAGGGACGAGTATCAAGGGGAGGGAAGCTGTAAATCCAGTTACAAAGGCCCAGATGAAGCTCATGGCAGCGAAAGCACTGTGGCAACTCTCAAAAGGGAATATTACTGTGTGTCGCAGCATCACAGAATCAAGGGCCCTTTTGTGTTTTGCTGTTCTGTTGGAGAAGGGGCCTGAAGATGTGAAATCGTTTTCAGCTTTTGCTTTAATGGAGATCACAGCCGTGGCAGAGCAACACGCAGAGCTGAGACGTTCAGCGTTCAAACCGAATGCGCCAGCTGCAAAAGCGGTGGTGGATCAGCTTCTTAGGATCATTAAGAAAGGGGAATCGGATCTTATGATGCCTTGCATCAGATCAATAGGTAACTTGGCAAGGACTTTCAGAGCAACAGAAACGAGAATCATAGGACCGTTGGTGAGTCTGCTTGAGGAAGGAGAAGTGGACGTTTCAGTTCAAAGGGAAGCGGCAATTGCACTGACCAATTTTGCTTGTACTGATAACTTTCTGCACGAGACTCACTGCTCAGCCATAATAGAAGCAGGAGGAGCAAAGCACTTGCTTCAAGTGGTTTACTTTGGGGGGCTAGCGATCCAAATTCCTGCGCTGAAACTTCTGTGTTATGTTGCAATGCACGTTCCCAAAAGTGAGACGCTGGCCGAAGGCGGTGAAGTCCTAAAAATTCTGGAGTGGTCTATGAAGCAGCAGAACCTGATCCAAGAACCCACCGTTGAAGAGCTTGTAGTTGAAGCCAAGAGTAGATTAGAACTGTATCAATCAAGAGGTACAAGAGGATTCCACTGA 1899 0.4961 MSSIVKEILASPIQMADQVIKLADEAQTFRIECLELKAKTEKLVALLRQAARASNDLYERPTRRIIDDTEQVLEKALQLVDKCRGNGLMKRLFTIIPATAFRKTSMQLENSLGDVQWLLRVSISANERDDEYLGLPPIAANEPILCLIWEQIAILLTGCSMEDRSDAAASLVSLARDNDRYNKLIIEEGGVPPLLKLLKEGHLEGQENAARAIGLLGKDPESVEQIVNAGVCTVFAKVLKEGEMKVQSMVAWAISELAYHHPKCQDHFAQNNCIRLLVRHLAFETIQEHSKYTIPSKQNMSSIHSVVMASNAQNQNDHDDHHQIARPSVNQSSSQMSNVVTNTMAMKQQPHQGGNANKHGHAHVSIAGTSIKGREAVNPVTKAQMKLMAAKALWQLSKGNITVCRSITESRALLCFAVLLEKGPEDVKSFSAFALMEITAVAEQHAELRRSAFKPNAPAAKAVVDQLLRIIKKGESDLMMPCIRSIGNLARTFRATETRIIGPLVSLLEEGEVDVSVQREAAIALTNFACTDNFLHETHCSAIIEAGGAKHLLQVVYFGGLAIQIPALKLLCYVAMHVPKSETLAEGGEVLKILEWSMKQQNLIQEPTVEELVVEAKSRLELYQSRGTRGFH 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1350 632 SMART arm_5 488 530 IPR000225 GO:0005515
Lele45g1350 632 SMART arm_5 219 259 IPR000225 GO:0005515
Lele45g1350 632 SMART arm_5 536 576 IPR000225 GO:0005515
Lele45g1350 632 SMART arm_5 177 218 IPR000225 GO:0005515
Lele45g1350 632 Gene3D - 371 618 IPR011989 -
Lele45g1350 632 FunFam Armadillo repeat only 2 150 322 - -
Lele45g1350 632 FunFam Armadillo repeat only 4 2 121 - -
Lele45g1350 632 Coils Coil 36 56 - -
Lele45g1350 632 PANTHER ARMADILLO REPEAT ONLY 4 1 628 - -
Lele45g1350 632 Gene3D - 3 121 IPR036537 GO:0007166
Lele45g1350 632 Pfam Armadillo/beta-catenin-like repeat 184 214 IPR000225 GO:0005515
Lele45g1350 632 Gene3D - 151 326 IPR011989 -
Lele45g1350 632 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 189 231 IPR000225 GO:0005515
Lele45g1350 632 SUPERFAMILY ARM repeat 156 598 IPR016024 -
Lele45g1350 632 MobiDBLite consensus disorder prediction 315 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1350 Lele-ChrLele45 23138754 23140769 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1350 152 278 U-box Gene Family AT2G28830 33.846 2.02e-06 48.9