Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1320 ATGTCCGAGTCACCTCGTCCCGATATGGACGAGTCTGTGACTATGACAAAGACCCTACCAGGTTCCGAGGTGTTGGAAGAGGGGCAAACTTCGTCCAACTCGAATGGGTTAACTCAGCAAACGCCGGAGCAACTCGTGGCCAGAGCCATAGCTCCTGTGAAGGTGGAGTTCCTTCGTCCTCCTCCTGTTAGAACTTCCTCCACAACCCAGAATGAGGATGCTTCTGAAGAAAAAGACAAGGATAAGGCCTCTGTTCAATCCGGCGGATTGATGAAGGAGAAGAAGTCGAAGCGCCAACTCAAGCGTGAACGTCGTCAGGAACAGAAGTCTGCTAAAAACATTTGTCCGGAAATTGCAAAGACAGGAGATATTAGTTCATGTCCTTACAAAGACAAATGCCGCTTCAGCCATGACTTAGAAGCCTTCAAGGCCCAGAAACTAACTGATTTAGAGGGAGAATGCCCTTTTTTTAAAGCAGAAGGTTCTTGTCCCTATTGGTTAGCATGTAGATTTTCCAGCACGCATACAGAAGGCATGCCTTCTGGAAATCTGAATGACCGGAGAAAAACTTCTGAAATAAATGGACTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGACGCGCTTCCCCAAGGCAGAAGCCAACCTCAAAGCTCTTGGACTTTGGGAATCATCTAAGTTAAAACGGGACAACTATAAGGAGGATGGCAACGTTGATTCAAAGGATTGCCACAATGCTGATAATAATGGTTCTTGTGAAGTTACCAATGACTTGGGTTCTAACTTAGAAAGCTCTGCTGAGGACACAAAAGTTGATAGTATTGATGGAAATTTAGATTCTGATTCACCTTGCCCTCAAAAGAGAAGAAAAACTGAAGAAAATTTTGGCCTTGATGCGGCAGAAAATGAAGGCGTGTGTGTTGCTGACCAAAACATTGAAAAAAGCTGCATACAAGGTGAACTAGCTGCAGTGCCTGATGTCATACCCCCTGAAACTGATCAAAGCATGAAGTTACACCCACGAGAAAAGAAGCTTATTGATTTTAGAGATAAGTTGTATCTTGCGCCCTTGACCACTGTTGGGAATCTCCCATTCAGGAGGATTTGCAAAGTATTAGGAGCTGATGTAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCCTCAGAATGGGCATTGCTGAGACGTCATTTATCTGAAGATTTATTTGGCGTGCAAATATGTGGGGCATATCCAGACACTATTGCACGAACTGTAGAACTGATAGAGAAGGAATGTACGATAGATTTTATTGATATAAACATGGGTTGTCCAATTGATATTGTTGTAAATAAGGGTGCTGGATCAGCTCTTCTTACAAAACCAATGCGGATGAAAAGTATTGTAGAGGTAGCTTCAGGCACAGTGGAGAAACCAATAACTATAAAGGTACGAACAGCTTATTTTGAAGGGAAAAATCGTGTCGATTCTATTATTGCGGACATTGGCTCTTGGGGAGCTAATGCAGTAACGATACATGGTAGATCACGTCAGCAACGATACAGCAAACTTGCTGATTGGGACTATGTCTACCAGTGTGCCAGGAAGGCACCTAATACTTTGCAAGTAGTAGGGAATGGAGACATTTTTTCATTTGTTGACTGGAACAAACACAAGTCTGAATGCTCTGAGCTTGATACATGCATGATTGCTCGTGGAGCACTGATTAAGCCTTGGATATTTACAGAAATCAAGGAACAAAGGCACTGGGACATTAGTTCCGGGGAGCGATTAAAATTTTTGAAAGATTTTGTACATTTTGGCCTTCAACACTGGGGTTCTGATACAAAAGGAGTGGAGACAACGAGACGATTTTTATTGGAATGGCTTAGCTACACATGTAGATATATACCTGTTGGCCTTTTAGATGTTATTCCGCAGAGACTAAACTGGCGTCCACCATCTTACTACGGACGTGATGACCTTGAGACTCTAATGGCTTCAGACTCTGCAGCTGACTGGATACGAATATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTTCATTTACGCCAAAGCATAAATCAAATGCTTACGATAGTGCTCAGAATGGCTGA 2118 0.4287 MSESPRPDMDESVTMTKTLPGSEVLEEGQTSSNSNGLTQQTPEQLVARAIAPVKVEFLRPPPVRTSSTTQNEDASEEKDKDKASVQSGGLMKEKKSKRQLKRERRQEQKSAKNICPEIAKTGDISSCPYKDKCRFSHDLEAFKAQKLTDLEGECPFFKAEGSCPYWLACRFSSTHTEGMPSGNLNDRRKTSEINGLSKDVQKLLWKNKTRFPKAEANLKALGLWESSKLKRDNYKEDGNVDSKDCHNADNNGSCEVTNDLGSNLESSAEDTKVDSIDGNLDSDSPCPQKRRKTEENFGLDAAENEGVCVADQNIEKSCIQGELAAVPDVIPPETDQSMKLHPREKKLIDFRDKLYLAPLTTVGNLPFRRICKVLGADVTCGEMAMCTNLLQGQASEWALLRRHLSEDLFGVQICGAYPDTIARTVELIEKECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVEKPITIKVRTAYFEGKNRVDSIIADIGSWGANAVTIHGRSRQQRYSKLADWDYVYQCARKAPNTLQVVGNGDIFSFVDWNKHKSECSELDTCMIARGALIKPWIFTEIKEQRHWDISSGERLKFLKDFVHFGLQHWGSDTKGVETTRRFLLEWLSYTCRYIPVGLLDVIPQRLNWRPPSYYGRDDLETLMASDSAADWIRISEMLLGKVPDGFSFTPKHKSNAYDSAQNG 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1320 705 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 349 591 - -
Lele45g1320 705 Coils Coil 90 110 - -
Lele45g1320 705 MobiDBLite consensus disorder prediction 260 293 - -
Lele45g1320 705 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 105 184 - -
Lele45g1320 705 Gene3D Aldolase class I 349 591 IPR013785 -
Lele45g1320 705 MobiDBLite consensus disorder prediction 7 45 - -
Lele45g1320 705 MobiDBLite consensus disorder prediction 1 114 - -
Lele45g1320 705 MobiDBLite consensus disorder prediction 71 96 - -
Lele45g1320 705 CDD DUS_like_FMN 353 588 IPR035587 -
Lele45g1320 705 SMART c3hfinal6 110 139 IPR000571 GO:0046872
Lele45g1320 705 SMART c3hfinal6 150 177 IPR000571 GO:0046872
Lele45g1320 705 ProSitePatterns Uncharacterized protein family UPF0034 signature. 437 455 IPR018517 GO:0008033|GO:0017150|GO:0050660
Lele45g1320 705 SUPERFAMILY FMN-linked oxidoreductases 353 666 - -
Lele45g1320 705 Gene3D - 104 183 - -
Lele45g1320 705 Pfam Dihydrouridine synthase (Dus) 356 590 IPR035587 -
Lele45g1320 705 ProSiteProfiles Zinc finger C3H1-type profile. 109 140 IPR000571 GO:0046872
Lele45g1320 705 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 40 699 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1320 Lele-ChrLele45 22966489 22971145 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele45g1320 Dus 2.1e-50 CL0036