Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1299 ATGGGCGACGCGCAGCGCCGAGGTTGTTGCCCGCCGATGGATCTTTTCCGGTCGGAGTCGATGCAGCTGGTTCAGCTCATCATTCCTATGGAGTCCGCTCACCTTACTGTCTCCTACCTCGGTGATCTAGGTCTTCTTCAGTTCAAAGATCTCAATGTTGAGAAGAGCCCTTTTCAACGGACTTATGCAAGTCAGCTAAAAAGATGTGGAGAGATGGCACGGAAATTACGATTTTTCAAGGAGCAAATGTTGAAGGCTGGTGTTTCACCTACAACCTTTGCTACTCAAGTTGATATGAACATAGATGATTTAGAGGTAAAACTTGCTGACCTTGAGGCAGAGTTGACTGAGATGAATGCGAATAGTGAAAAGTTGCAACGCTCTCACAATGAACTTGTGGAATATAAGCTCGTTCTTCAGAAGGCTGGCGAGTTTTTCCATTCAGCTCAGAATCGTGCCTTGGAGCAGCAGAGAGAACTTGAATCACGTCAGAGTGGAGAATCTATGGAAACACCATTATTACAAGATCAAGAAATGTCAACAGACTCAAAGCAAGTGAAGTTGGGTTTTCTAGCTGGTCTTGTTCCCAGGGAAAGATCCATGGCATTTGAGAGAATTTTATTTCGCGCTACTAGGGGCAATGTGTTTCTGAGGCAAGTCGTTGTTGAGGATCCTGTCACAGACCCTGTTTCTGGAGAAAAGGTTGAGAAAAATGTATTTTTGGTCTTCTATGCTGGTGAAAGATCAAAAGCAAAGATTCTGAAAATATGTGAAGCCTTTGGGGCAAATCGTTATCCTTTCGCTGAGGAATCAGGAAAACAAGCTCAAATGATTGCAGAGGTTTCAGCAAGACTCTCGGAGTTGAAGACTACTATAGATGCTGGACTGCTGCACAAGGGTAACTTGCTACAGATTATTGGGGCTCAATTTAATCAGTGGAATCTTTTGGTGAGAAAGGAGAAGTCCATATATCATACCCTGAACATGCTTAGCCTTGATGTGACCAAAAAATGCCTAGTGGCTGAGGGTTGGAGTCCTGTTTTTGCAACAAAGCAGATACAGGATGCCTTGGAGCGGGCAGCATTTGACTCTAACTCCCAAGTTGGTACCATTTTCCAAGTTTTGCATACCAGGGAGCCACCGCCCACATATTTCCGGACAAATAAATTCACTTCTTCATTTCAGTCCATTGTTGATGCATACGGGGTGTCTAAGTATCGGGAGGCAAATCCTGCTGTATTTACTATAATTACCTTTCCATTTCTTTTTGCGGTAATGTTTGGTGATTGGGGGCATGGAATATGTTTACTACTGGCAACTTCGTATTTAATAATGAGGGAGAAAAAGTTCTCTAGCCAGAAGCTTGGAGATATTATGGAAATGACTTTTGGAGGTCGTTATGTTATTTTGATGATGGCCCTCTTCTCAATCTTCACTGGTTTGATCTATAATGAGTTCTTCTCTGTCCCATTTGAACTCTTTGGTCCCTCAGCATATGCATGCCGTGACTTTTCTTGCAGAGATGCAACTACTGAAGGTTTGATAAAAGTACGACGCACATACCCATTTGGAGTGGACCCTGTATGGCATGGTTCAAGAAGTGAATTGCCATTTCTAAATTCATTGAAAATGAAAATGTCAATTCTTCTTGGGGTGGCTCAAATGAACCTGGGAATTATAATAAGCTTTTGCAATGCCAAATTCTTTGGCAATGGCCTGAATGTATGGTTCCAATTTCTTCCCGAGATTATATTTCTCAACTGTTTGTTTGGTTACCTATCCCTCCTCGTCATTATGAAGTGGTGCACTGGTTCACAAGCTGATTTGTACCATGTAATGATCTACATGTTTCTGAGTCCTACAGATGATTTGGGAGAAAACCAGCTCTTTCCTGGTCAGAAAACTTTACAGATTGTACTGCTACTTCTGGCCCTCGTCTCTGTACCCTGGATGTTGATACCAAAACCTTTTCTTTTGAAGAAGCAGCACAATGATAGGCACCAGGGCGAATCCTATGCACCACTTCAAAGCACAGAGGAGAGCTTGCTAGTGGAGTCAAATCATGATTCCCATGGTCATGAGGAATTTGAGTTCAGTGAAGTCTTTGTCCATCAACTCATACATACCATTGAATTTGTACTTGGAGCAGTGTCTAATACAGCTTCTTACCTTCGTCTATGGGCCCTTAGCCTTGCGCATTCGGAGTTGTCAAGCGTTTTCTATGATAAGGTCCTTCTTCTTGCATGGGGGTACAACAACGTGATCATTCTGATAGTGGGTTTCATTGTATTTGCTTTTGCAACTGTGGGGGTGTTGCTTGTGATGGAAACCCTCAGCGCCTTCCTCCATGCTCTGCGTCTTCACTGGGTTGAGTTCCAAAATAAGTTCTATGAGGGAGATGGTTACTTGTTCCATCCTTACTCGTTCGCATTGCTGGATGACGAAGATGATTAA 2454 0.4303 MGDAQRRGCCPPMDLFRSESMQLVQLIIPMESAHLTVSYLGDLGLLQFKDLNVEKSPFQRTYASQLKRCGEMARKLRFFKEQMLKAGVSPTTFATQVDMNIDDLEVKLADLEAELTEMNANSEKLQRSHNELVEYKLVLQKAGEFFHSAQNRALEQQRELESRQSGESMETPLLQDQEMSTDSKQVKLGFLAGLVPRERSMAFERILFRATRGNVFLRQVVVEDPVTDPVSGEKVEKNVFLVFYAGERSKAKILKICEAFGANRYPFAEESGKQAQMIAEVSARLSELKTTIDAGLLHKGNLLQIIGAQFNQWNLLVRKEKSIYHTLNMLSLDVTKKCLVAEGWSPVFATKQIQDALERAAFDSNSQVGTIFQVLHTREPPPTYFRTNKFTSSFQSIVDAYGVSKYREANPAVFTIITFPFLFAVMFGDWGHGICLLLATSYLIMREKKFSSQKLGDIMEMTFGGRYVILMMALFSIFTGLIYNEFFSVPFELFGPSAYACRDFSCRDATTEGLIKVRRTYPFGVDPVWHGSRSELPFLNSLKMKMSILLGVAQMNLGIIISFCNAKFFGNGLNVWFQFLPEIIFLNCLFGYLSLLVIMKWCTGSQADLYHVMIYMFLSPTDDLGENQLFPGQKTLQIVLLLLALVSVPWMLIPKPFLLKKQHNDRHQGESYAPLQSTEESLLVESNHDSHGHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGYNNVIILIVGFIVFAFATVGVLLVMETLSAFLHALRLHWVEFQNKFYEGDGYLFHPYSFALLDDEDD 817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1299 817 Coils Coil 94 128 - -
Lele45g1299 817 PANTHER VACUOLAR PROTON ATPASES 15 814 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele45g1299 817 Pfam V-type ATPase 116kDa subunit family 39 809 IPR002490 GO:0033179|GO:0046961|GO:1902600
Lele45g1299 817 PIRSF ATP6V0A1 11 817 IPR026028 GO:0000220|GO:0046961
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1299 Lele-ChrLele45 22796811 22804805 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1299 13 817 Primary Pumps ATPases(2) AT4G39080 78.218 0.0 1310
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele45g1299 45 22796811 22804805 Lele47g0107 47 798374 806320 hybridization
Lele45g1299 45 22796811 22804805 Lele48g0114 48 1525685 1530756 hybridization