Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1298 ATGGGCAGGCCAAGAGCTCAAAGACGAACCCTTGATTCTTACACAGTCAGACACATAAACAAAACCATTACCGCTGGCGACTGCGTGCTTATGCGGCCGTCCGACCCGTCAAATCCGTCATATGTGGCTAGGATTGAGCGGATCGAAGCTGACTCGCGTGGCGCCAACGTGAAGGTCCACGTCCAGTGGTATTACCGGCCGGAGGAGTCAATCGGCGGCCGGAGGCAGTTTCACAGTTCTAAGGAGGTCTTCCTTTCGGATCATTTTGATGTTCAGAGTGCCGACACGATCGAAGGCAAGTGTACGGTTCACAGTTTCAAGAGCTACACGAAACTTGAAGCTGTTGGAAACGAGGATTTCTTCTGTCGCTTCGAATACAATTCCGCCACCGGTGCTTTCAATCCTGACAGAGTGGCTGTGTACTGCAAATGTGAGATGCCCTACAACCCTGATGACCTAATGGTCCAGTGTGAGAGTTGCAGTGATTGGTTTCATCCTACTTGTATAGATATGACTGTGGAGGAAGCCAAAGGACTTGACCACTTCTTTTGTGAAAACTGTTCTGGTGAAGGTGAATACAAAACTCCATCGAAGTCTCAGCGAACTCTCCCGCACGAAGCTACCATTCACCATTCTCTTCCTACTCTGTTTGTCATTATGGATCGTACTCTCAAGTCCCTTCTTGTCTTCGCACTCCTCTTCGTCCCCGTTGTGTCGTCAGAGACGGAGAGCTTCTCCGTCGTCGATAGTGAAGCCGACCCACTGATCCGGCAGGTGGTCGATGGCGATCATCGATTGGGAGCAGAGCACCATTTTTCTCTGTTCAAGCGTAGGTTCGGGAAGTCGTACGAGTCTAAGGACGAGCACGATTACAGGTTCAATATATTCAAGGCTAACCTGCGCCGAGCTCGGCGACACCAGAGTATGGACCCAACGGCGGTTCACGGTGTGACTCAGTTCTCGGATATGACGCCGTCGGAGTTTCGGAAGGTTTTGGGTCTCAGAGGCCTCAGGTTTCCTGCTGATGCGAACAATGCTCCCATCTTGCCCACCGATGATCTTCCCAGCGACTTTGATTGGAGAGATCATGGAGCTGTTACGCCTGTTAAAAACCAGGGTTCGTGTGGATCATGTTGGAGTTTCAGCACAACTGGAGCCCTGGAAGGTGCTCACTTCCTCTCTACCGGGGAACTTGTCAGTCTTAGCGAGCAGCAGCTCGTGGACTGTGATCATGAGTGTGATCCAGAAGAACCACGTTCTTGCGACTCTGGATGCAATGGCGGACTGATGAATAGTGCCTTTGAGTACATCCTTAAAGCTGGCGGAGTCATGCGGGAGGAAGACTATCCTTATACTGGCACTGATCGTGGGACCTGCAAATTCGACAAGTCAAAGATTGCAGCTTCGGTTGCCAACTTTAGTGTCGTTTCACTTGACGAAGATCAGATTGCTGCTAATCTTGTGAAAAATGGACCCCTTGCTGTGGCCATCAATGCAGTATTTATGCAGACATATATTGGCGGGGTATCATGCCCATACATATGTTCAAGGAGGTTGGACCATGGAGTATTGCTTGTGGGATATGGTTCTGCTGGGTATGCTCCCATTCGGATGAAAGAGAAAGCATATTGGATAATTAAAAATTCATGGGGAGAGAATTGGGGAGAAAATGGTTACTACAAGATTTGCCGGGGGCGCAATATTTGTGGAGTGGACTCCATGGTTTCCACTGTGGCTGCTGTTCATACCACTTCTCCGTAG 1761 0.4986 MGRPRAQRRTLDSYTVRHINKTITAGDCVLMRPSDPSNPSYVARIERIEADSRGANVKVHVQWYYRPEESIGGRRQFHSSKEVFLSDHFDVQSADTIEGKCTVHSFKSYTKLEAVGNEDFFCRFEYNSATGAFNPDRVAVYCKCEMPYNPDDLMVQCESCSDWFHPTCIDMTVEEAKGLDHFFCENCSGEGEYKTPSKSQRTLPHEATIHHSLPTLFVIMDRTLKSLLVFALLFVPVVSSETESFSVVDSEADPLIRQVVDGDHRLGAEHHFSLFKRRFGKSYESKDEHDYRFNIFKANLRRARRHQSMDPTAVHGVTQFSDMTPSEFRKVLGLRGLRFPADANNAPILPTDDLPSDFDWRDHGAVTPVKNQGSCGSCWSFSTTGALEGAHFLSTGELVSLSEQQLVDCDHECDPEEPRSCDSGCNGGLMNSAFEYILKAGGVMREEDYPYTGTDRGTCKFDKSKIAASVANFSVVSLDEDQIAANLVKNGPLAVAINAVFMQTYIGGVSCPYICSRRLDHGVLLVGYGSAGYAPIRMKEKAYWIIKNSWGENWGENGYYKICRGRNICGVDSMVSTVAAVHTTSP 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1298 586 SUPERFAMILY Cysteine proteinases 269 578 IPR038765 -
Lele45g1298 586 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 372 383 IPR000169 -
Lele45g1298 586 Pfam BAH domain 22 136 IPR001025 GO:0003682
Lele45g1298 586 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 543 562 IPR025661 -
Lele45g1298 586 Gene3D Cysteine proteinases 250 579 - -
Lele45g1298 586 PRINTS Papain cysteine protease (C1) family signature 521 531 IPR000668 GO:0006508|GO:0008234
Lele45g1298 586 PRINTS Papain cysteine protease (C1) family signature 543 549 IPR000668 GO:0006508|GO:0008234
Lele45g1298 586 PRINTS Papain cysteine protease (C1) family signature 372 387 IPR000668 GO:0006508|GO:0008234
Lele45g1298 586 SMART pept_c1 354 579 IPR000668 GO:0006508|GO:0008234
Lele45g1298 586 ProSiteProfiles Zinc finger PHD-type profile. 139 190 IPR019787 -
Lele45g1298 586 SMART PHD_3 141 188 IPR001965 -
Lele45g1298 586 Pfam PHD-finger 141 188 IPR019787 -
Lele45g1298 586 ProSitePatterns Eukaryotic thiol (cysteine) proteases histidine active site. 519 529 IPR025660 -
Lele45g1298 586 SMART Inhibitor_I29_2 272 328 IPR013201 -
Lele45g1298 586 ProSiteProfiles BAH domain profile. 21 137 IPR001025 GO:0003682
Lele45g1298 586 SMART BAH_4 21 137 IPR001025 GO:0003682
Lele45g1298 586 Pfam Cathepsin propeptide inhibitor domain (I29) 272 328 IPR013201 -
Lele45g1298 586 FunFam Cysteine protease RD19A 254 579 - -
Lele45g1298 586 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 203 IPR013083 -
Lele45g1298 586 CDD Peptidase_C1A 355 578 IPR039417 -
Lele45g1298 586 SUPERFAMILY FYVE/PHD zinc finger 132 193 IPR011011 -
Lele45g1298 586 Gene3D - 4 133 IPR043151 -
Lele45g1298 586 PANTHER OS08G0421900 PROTEIN 5 205 - -
Lele45g1298 586 ProSitePatterns Zinc finger PHD-type signature. 142 187 IPR019786 -
Lele45g1298 586 Pfam Papain family cysteine protease 354 577 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1298 Lele-ChrLele45 22788192 22794692 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1298 31 139 Core DNA Replication Machinery Family AT4G14700 27.523 3.05e-08 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele45g1298 Peptidase_C1 5e-75 CL0125