Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1241 ATGGAAGACGACGACGAAGTAGTCTCGTGCTCTTCCGATTCCGATGACGACTACGATGACTTCTCCAGTGAATGTGAAGAGAGCCTCGATAAGGATCATCCGTCAGAGGCCGACATTTATTCTCTACCCGATGAAGAGAGGAAATCGCAGAATATTGATGCTCTTGTGAGGGGCAACCTTGTCGTGAAGACACAATCATTGCTTCCACGAGTCCTTTCTGTAACACAAGGAGCAGCGGTTTGTAGAAAACCCTTTAAACCTCCCAGCTCCGATGGTTACAATAATGGAAATAAAGAGCTTACACGTCGCCTTTGTGCTCGGAAAAGGTTTGTCCCGTGGGGCTCTACCAGACCGGTATTGGTGGCAATTACCAACCGGTTAAATTCACCAATAAACGTTGAAAAAGATGTTGCCGAAGAGGAAGTGTCTTTGCCACCTGGGATTGAATCTCTGGTGTTGTGGCAGCCCGAAGGCCATGAGGACGAGGGCCGTGATTTGACTCCAATAGCAGTGGATCCGTTGCTTGTTCGTTTCCTTAGACCACATCAGAGAGAAGGAGTTCAGTTTATGTTTGAATGTGTTTCAGGGCTACTTAGCACCTCAAATATTCACGGGTGCATCCTGGCAGATGATATGGGGCAACATCTTTTTTATAAAGCTGCTTTTGATACTGCATGCAGTCTGGGGAAGACTTTGCAGTCAATCGCACTTCTGTATACACTACTTTGTCAAGGGTTTGATGGAAAACCAATGGTGAGAAAAGCCATCATCGTGACCCCTACCAGCCTTGTAAGTAACTGGGAAGCTGAAATTAAGAAGTGGGTCGGAGAAAGAGTTCGTCTTGTTGCTCTGTGTGAAAGTACAAGAGATGATGTCATTTCTGGGATTGACAATTTTACAAGTCCCCACAGCTCTCTACAGGTGCTGATAGTATCATATGAAACTTTCCGAATGCATTCATCAAAATTTGGTCATAGTGACTCTTGTGATCTACTCATATGTGATGAGGCTCACAGGCTGAAAAATGATCAGACAATTACAAACCGGGCATTGGCTTCTCTCTCATGCAAACGTAGAGTGTTGCTTTCAGGAACTCCTTTGCAGAATGACCTAGAGGAATTCTTTGCGATGGTTAACTTCACTAATCCTGGAATATTAGGTGACATTACATATTTTCGCCGGTACTTTGAGGGACCAATTATTTGTGGAAGAGAACCTACTTCTTCTGCAGACGAGAAGAAGCTAGGTGCTGACCGCTCTGCAGAGTTAAGTGTGAAAGTTAACCAGTTTATATTGAGAAGGACTAATGCATTATTATCAAATCACTTACCGCCAAAGATAGTTGAAGTTGTTTGCTGCAAGTTAACTGCACTCCAGTCAGACCTATATAAATATTTTATACAGTCCAAAAATGTTAAACGCGCAATTGTTGAAGACGTAAAGCAATCAAAGATTTTAGCCTATATAACAGTTCTCAAAAAGTTGTGCAACCATCCAAAGCTTATATTTGATACTATTCGAAGTGGGAGTCCAGGAACTTCGGGTTTTGAGGACTGCATTCGGTTCTTCCCACCAGAGATGGTATCAGGAAGATCTGGCTCATGGACTGGAGGGGATGGAGCTTGGATTGAGTTGTCAGGAAAAATGCATGTGTTAGCAAGATTACTTGCCCAGATACGGCAAAGGACCAATGACCGCATCGTCCTTGTCTCAAACTACACACAGACTCTGGATCTTTTTGCTCAATTGTGTCGGGAACGAAGGTACCCGTACTTGAGGCTTGATGGTGCAACTTCAATCAGTAAAAGGCAGAAGTTAGTAAACCGCTTCAATGACCAATCTAAGGAAGAATTCGTTTTTCTCTTGAGCAGCAAGGCTGGTGGCTGTGGCCTCAATTTAATCGGAGGAAATCGATTAGTCTTATTCGATCCTGATTGGAATCCAGCAAATGATAAACAAGCTGCAGCAAGAGTTTGGAGGGATGGGCAGAAGAAAAGAGTGTACATTTATAGATTTTTGAGTGCGGGGACAATAGAGGAAAAGGTTTACCAGCGTCAGATGTCAAAAGAAGGGCTACAAAAGGTCATTCAGCAGGAGCAAACAGATAACCTTGAAACACTGGGTAACTTTTCGACAGAGGTCCTCCGCGATCTGTTCTCATTTCATGAAACTGTCAAGTCAGAGATTCATGAAAGGATGCATTGTACTCGGTGCCAGACAAATGATGATGGACCTCAGAGCGATGATGGGAAATATGTAGCTCATTCAACAATAAGTAACGATGAATTTGATGAGGAAACCTCTGATGATATAGGTGGATTTGCAAAATTTGCAGGCTGTATACACAAGTTAAAGAAATCAGAAAAGCAGGTAGGGACCCCCTTGGAAGAAGATTTAGGTAGCTGGGGCCATCATTTCTTTCCAACGACTGTACCGGATGCTATTCTTCAGGCTTCAGCCGGAGAGGAGGTGAGCTTTGTTTTTACAAACCAAGTTGATGGAAAGCTGACACCAATTGATTCAACCGTGAGTTCAGAGCAACAGCAAGAGCAGAGCAAGGAACTGATGCAGCTAAAACGGAACGTCAAACAAAATCCGGTTCTTTCTTTAGGTCAGAAGCCATCTTACTCACTCAAGCCTTCAATGGGACCAGTTTTGAGTTGTGTTAGAACGAAGGAAAATATATCAACACAAACTGTTTTAAATTCCAAAAACTCCCTTGTAAATCAATTACCGCAGAAAAGATCATGTCCAACTTATGTCGATTCTGATCAATTAGAATAA 2784 0.43 MEDDDEVVSCSSDSDDDYDDFSSECEESLDKDHPSEADIYSLPDEERKSQNIDALVRGNLVVKTQSLLPRVLSVTQGAAVCRKPFKPPSSDGYNNGNKELTRRLCARKRFVPWGSTRPVLVAITNRLNSPINVEKDVAEEEVSLPPGIESLVLWQPEGHEDEGRDLTPIAVDPLLVRFLRPHQREGVQFMFECVSGLLSTSNIHGCILADDMGQHLFYKAAFDTACSLGKTLQSIALLYTLLCQGFDGKPMVRKAIIVTPTSLVSNWEAEIKKWVGERVRLVALCESTRDDVISGIDNFTSPHSSLQVLIVSYETFRMHSSKFGHSDSCDLLICDEAHRLKNDQTITNRALASLSCKRRVLLSGTPLQNDLEEFFAMVNFTNPGILGDITYFRRYFEGPIICGREPTSSADEKKLGADRSAELSVKVNQFILRRTNALLSNHLPPKIVEVVCCKLTALQSDLYKYFIQSKNVKRAIVEDVKQSKILAYITVLKKLCNHPKLIFDTIRSGSPGTSGFEDCIRFFPPEMVSGRSGSWTGGDGAWIELSGKMHVLARLLAQIRQRTNDRIVLVSNYTQTLDLFAQLCRERRYPYLRLDGATSISKRQKLVNRFNDQSKEEFVFLLSSKAGGCGLNLIGGNRLVLFDPDWNPANDKQAAARVWRDGQKKRVYIYRFLSAGTIEEKVYQRQMSKEGLQKVIQQEQTDNLETLGNFSTEVLRDLFSFHETVKSEIHERMHCTRCQTNDDGPQSDDGKYVAHSTISNDEFDEETSDDIGGFAKFAGCIHKLKKSEKQVGTPLEEDLGSWGHHFFPTTVPDAILQASAGEEVSFVFTNQVDGKLTPIDSTVSSEQQQEQSKELMQLKRNVKQNPVLSLGQKPSYSLKPSMGPVLSCVRTKENISTQTVLNSKNSLVNQLPQKRSCPTYVDSDQLE 927
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1241 927 FunFam DNA repair and recombination protein RAD54 150 433 - -
Lele45g1241 927 Pfam Helicase conserved C-terminal domain 552 661 IPR001650 -
Lele45g1241 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 434 IPR027417 -
Lele45g1241 927 FunFam DNA repair and recombination protein RAD54-like 540 711 - -
Lele45g1241 927 Gene3D - 456 724 - -
Lele45g1241 927 SMART ultradead3 175 392 IPR014001 -
Lele45g1241 927 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 438 738 IPR027417 -
Lele45g1241 927 MobiDBLite consensus disorder prediction 1 37 - -
Lele45g1241 927 Pfam SNF2-related domain 182 502 IPR000330 GO:0005524|GO:0140658
Lele45g1241 927 Gene3D - 434 742 IPR027417 -
Lele45g1241 927 MobiDBLite consensus disorder prediction 1 25 - -
Lele45g1241 927 PANTHER SNF2/RAD54 FAMILY MEMBER 65 859 - -
Lele45g1241 927 Coils Coil 845 865 - -
Lele45g1241 927 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 551 708 IPR001650 -
Lele45g1241 927 SMART helicmild6 578 662 IPR001650 -
Lele45g1241 927 CDD SF2_C_SNF 545 673 - -
Lele45g1241 927 Gene3D - 154 433 IPR038718 -
Lele45g1241 927 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 384 IPR014001 -
Lele45g1241 927 CDD DEXHc_RAD54 179 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1241 Lele-ChrLele45 22413729 22420174 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1241 542 719 RAD5 or RAD16-like Gene Family AT5G43530 36.313 1.79e-24 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele45g1241 SNF2_N 4.8e-47 CL0023