Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele45g1231 | ATGGCTCAGCCAACTTCCGACGCCGCCGATCTGAATCAGCAGCAACAGCAGCCGCAGCCGCCGCAGCAATGGACGCAGCCGCAGCAGTATCCCCAACAATGGATGAGCATGCAGTATCCGGCTTCGGCTATGGCGATGATGCAGCACCAGATGATGATGTATCCGCCGCATTATGTCCCTTACGTTCAGCAATATTATCAGCCGCCATACCACCACCCGTACTTGAAACAGCCGCCGCCACAGCCGCAGCACCACCAGCTGAGCTCCAACGATGAGATCAGGACGATCTGGCTCGGTGACCTTCATCATTGGATGGACGAGAGCTACCTAAATAGCTGCTTTGCTCACACAGGCGAGGTATATTCAGTGAAGGTTATACGAAATAAGCAAACTGGTCAGTCCGAGGGATATGGATTTGTTGAGTTTTGTACACGTGGAACAGCTGATAAAGTTTTACAGAGCTACAATGGTACTATGATGCCGAATACAGATCAGCCATTTCGCCTAAATTGGGCTGCTTTCAGTTCGGGTGATAGGCGATCTGATGCTAATTCAGATTACTCTATATTTGTTGGGGACTTGGCTGTAGATGTTACTGATGCTATGCTACAGGAAACCTTTGCAAGCAGATATTCGTCTGTTAAGGGAGCAAAGGTTGTCATTGATGCTAGCACTGGCCGTTCAAAAGGTTATGGTTTTGTTAGGTTTTCTGATGAAAATGAGAGATCCAGGGCAATGACTGAAATGAATGGTCAATATTGTTCAAGTAGGCCAATGCGAATAAGTATTGCAACTCCCAAGAAATCATTCGGACATCAGCAACATTACTCTTCACAAGCTGTGGTGTTGGCAAATGGATATGCTTCTAATGGTGCTATGGCCCAAGGTTCCCAGTCTGAAGGGGACTCTTTTAACACAACCATATTTGTTGGAGGGCTTGATTCTGACGTCAGTGATGAAGATCTCAGACAACCATTTTTGCAATATGGTGAGGTTGTCTCTGTGAAGATACCGGTTGGAAAGGGGTGTGGTTTTGTTCAATTTGCTAATAGAAAGAATGCAGAGGAGGCGATTCAGGCATTGAATGGGACAGTAATAGGGAAGCAGACAGTGCGTCTTTCTTGGGGTCGCAGTCCAGGAAACAAGCATTGGAGGTCGGATTCCAATGGAGGTCAGCATGGAGGGCAAGGTTATGGTGTAAGACAGCATCAGGCATGA | 1218 | 0.4729 | MAQPTSDAADLNQQQQQPQPPQQWTQPQQYPQQWMSMQYPASAMAMMQHQMMMYPPHYVPYVQQYYQPPYHHPYLKQPPPQPQHHQLSSNDEIRTIWLGDLHHWMDESYLNSCFAHTGEVYSVKVIRNKQTGQSEGYGFVEFCTRGTADKVLQSYNGTMMPNTDQPFRLNWAAFSSGDRRSDANSDYSIFVGDLAVDVTDAMLQETFASRYSSVKGAKVVIDASTGRSKGYGFVRFSDENERSRAMTEMNGQYCSSRPMRISIATPKKSFGHQQHYSSQAVVLANGYASNGAMAQGSQSEGDSFNTTIFVGGLDSDVSDEDLRQPFLQYGEVVSVKIPVGKGCGFVQFANRKNAEEAIQALNGTVIGKQTVRLSWGRSPGNKHWRSDSNGGQHGGQGYGVRQHQA | 405 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele45g1231 | 405 | MobiDBLite | consensus disorder prediction | 377 | 405 | - | - | |
Lele45g1231 | 405 | Gene3D | - | 285 | 405 | IPR012677 | - | |
Lele45g1231 | 405 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 94 | 174 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | CDD | RRM1_SECp43_like | 95 | 175 | - | - | |
Lele45g1231 | 405 | SUPERFAMILY | RNA-binding domain, RBD | 171 | 278 | IPR035979 | GO:0003676 | |
Lele45g1231 | 405 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 83 | 382 | - | - | |
Lele45g1231 | 405 | CDD | RRM3_NGR1_NAM8_like | 305 | 376 | - | - | |
Lele45g1231 | 405 | FunFam | Polyadenylate-binding protein RBP47B | 175 | 277 | - | - | |
Lele45g1231 | 405 | SUPERFAMILY | RNA-binding domain, RBD | 300 | 399 | IPR035979 | GO:0003676 | |
Lele45g1231 | 405 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 187 | 266 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | Gene3D | - | 93 | 173 | IPR012677 | - | |
Lele45g1231 | 405 | MobiDBLite | consensus disorder prediction | 1 | 29 | - | - | |
Lele45g1231 | 405 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 306 | 378 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | FunFam | Polyadenylate-binding protein RBP47B | 93 | 173 | - | - | |
Lele45g1231 | 405 | SMART | rrm1_1 | 95 | 170 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | SMART | rrm1_1 | 307 | 374 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | SMART | rrm1_1 | 188 | 262 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | CDD | RRM2_SECp43_like | 186 | 265 | - | - | |
Lele45g1231 | 405 | FunFam | Polyadenylate-binding protein RBP47 | 288 | 404 | - | - | |
Lele45g1231 | 405 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 96 | 163 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 189 | 259 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 308 | 371 | IPR000504 | GO:0003723 | |
Lele45g1231 | 405 | Gene3D | - | 174 | 279 | IPR012677 | - | |
Lele45g1231 | 405 | SUPERFAMILY | RNA-binding domain, RBD | 64 | 174 | IPR035979 | GO:0003676 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele45g1231 | Lele-ChrLele45 | 22326421 | 22330486 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele45g1231 | 93 | 375 | Eukaryotic Initiation Factors Gene Family | AT2G23350 | 28.028 | 1.66e-28 | 115 |