Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1218 ATGCCGCGTCCTTGTTTTCACAAGCTTGTTCTTCCGTCCACCATCCAAGGCGGTCAACTGAGGGTTCCAGATCATTTTTTGAGGAAGTTTGGTGGGGAGCTCTCTACAATTGCTACCCTCAGTGTTCCTGATGGCAGCGTCTGGCGTATTTGTTTAAAAAGGGTAGACAACAAATTTTGGCTCCATGATGGTTGGAAGGAGTTCGTTCAACGGTACTCCATTGGTGTTGGATGCTTTTTGGTGTTCAGATATGAAGGGAATTCATCTTTCAATGTTCATATTTTTAATTTGGCTGCTTCTGAGATAAATTATCAATTAGTGAATCGAAATAGTGATGAACGGCCTTACTTTACCAGCCAACATATTTTTGATGAAATGGAGGATGAAGATTCCATTGAATACTCGGATTCAACAACTTCTCATTTAACCCCTGGTGCATTTAATAACAAGGTTATTGCTGGATCTGCAGATCAATTGACACCTGGCAAGAATTATACTCCTTCACCATTGCAGAATTTGTTTAATGGGTCTAAACTTAATAGCTTAAACTGGGGAGACACCGTTTCTTCAAAGGGTACCAATTCACAAAACAATCAATCGACCAAAGATAAAGGTGTTCAGTTCAATGCAGCTGAATTTAAAAGGTCTACTGAAGAGTTGAAATTGCGCGCTTCCAATAATGACATGCAGAGAGTTAAAAAAACTGTAAGAAAAAGGCAGAAAACTGATCCTAATGGTGAAGAATCCTCTCCTCATCATGAAGAGGAGGTAGAAATACGTTTTAGATTCTATGAAAGTGCTTCTGCAAGAAAAAGAACCGTGACAGCAGAAGAAAGAGAAAGGGCAGTTAATGCTGCAAAAGCATACGAACCGCCTAATCCTTTCTGTAGGGTTGTCCTGCGGCCCTCCTATCTATATAGGGGATGCATAATGTATTTGCCATCTTGCTTTGCAGAAAAGCATCTGAATGGGGTTTCAGGTTTCATCAAACTCCAGATTACTGAGGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAAGCGGTAGAGCGAAGTTAAGCCAGGGGTGGTTTGAATTCGCCCAGGATAACAACATCGGGGAAGGCGACGTCTGTGTTTTCGAGCTGCTTAGAGCGAGGGAAGTAGTGCTGAAAGTTACTATATTCCAAGTCCTCGAAGAAGATGTGGGATTATTGATCCCTTCCATACAGCAAAACCAAAGCATGAGTCCAACCTCAAAACTGTTGAACAATCCCTTGCAGCTGCAAGATGTTAGCCCCATTAAAATGATTAGAAATTAG 1299 0.4172 MPRPCFHKLVLPSTIQGGQLRVPDHFLRKFGGELSTIATLSVPDGSVWRICLKRVDNKFWLHDGWKEFVQRYSIGVGCFLVFRYEGNSSFNVHIFNLAASEINYQLVNRNSDERPYFTSQHIFDEMEDEDSIEYSDSTTSHLTPGAFNNKVIAGSADQLTPGKNYTPSPLQNLFNGSKLNSLNWGDTVSSKGTNSQNNQSTKDKGVQFNAAEFKRSTEELKLRASNNDMQRVKKTVRKRQKTDPNGEESSPHHEEEVEIRFRFYESASARKRTVTAEERERAVNAAKAYEPPNPFCRVVLRPSYLYRGCIMYLPSCFAEKHLNGVSGFIKLQITEGRQWPVRCLYRSGRAKLSQGWFEFAQDNNIGEGDVCVFELLRAREVVLKVTIFQVLEEDVGLLIPSIQQNQSMSPTSKLLNNPLQLQDVSPIKMIRN 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1218 432 CDD B3_DNA 294 388 IPR003340 GO:0003677
Lele45g1218 432 MobiDBLite consensus disorder prediction 185 206 - -
Lele45g1218 432 Gene3D - 273 392 IPR015300 -
Lele45g1218 432 SUPERFAMILY DNA-binding pseudobarrel domain 289 389 IPR015300 -
Lele45g1218 432 PANTHER B3 DOMAIN-CONTAINING 3 380 - -
Lele45g1218 432 ProSiteProfiles B3 DNA-binding domain profile. 296 391 IPR003340 GO:0003677
Lele45g1218 432 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Lele45g1218 432 Pfam B3 DNA binding domain 7 96 IPR003340 GO:0003677
Lele45g1218 432 Pfam B3 DNA binding domain 299 388 IPR003340 GO:0003677
Lele45g1218 432 Gene3D - 1 98 IPR015300 -
Lele45g1218 432 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Lele45g1218 432 SMART B3_2 6 98 IPR003340 GO:0003677
Lele45g1218 432 SMART B3_2 296 391 IPR003340 GO:0003677
Lele45g1218 432 MobiDBLite consensus disorder prediction 185 255 - -
Lele45g1218 432 MobiDBLite consensus disorder prediction 214 255 - -
Lele45g1218 432 CDD B3_DNA 4 96 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1218 Lele-ChrLele45 22224428 22227650 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1218 1 396 B3 DNA Binding Superfamily AT3G18990 49.497 8.38e-128 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele45g1218 B3 5e-17 CL0405