Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1217 ATGGACGAGGGAACTAATCGCCGGTGCCGATCATTCTTGCTGGAGGGCAAACCGGCGCACTTTTTCAAGTTAATACTTCCTACTACGATTCTTGACAAAAAATTGAGAGTTCCTAAGACGTTTGTGAATCATCATGGGAATGATTTCTCTACCATTATTACTTTACATGATCCTAATGCTCGAGAATGGAAAATTGGTTTGGGGAAGAATGAAGAAGACGATGATGATGCTTGGTTCTCAGAAGGTTGGGATAAGTTTCTGGAATATTACTCCATCACCAAAGAACACTTTCTGGTTTTCAGATACGAAGGAGACTCAAGATTCCATTGGTGCCCAGTGCACAACAAGGCTACCACCGAGTGGAGTGTAAGGAGATGCAATCGAATAAGCTGTACCCCATTATTTGAAAGTGTGACCTCCAAGTCACGTGACAACAACAACGAACATGATCATCACCGGAGTCAAAATGATAATGATGATGATCATCATGGTATTGGGAATCACTTTACTGAAGAATATTTTCCTGATGATGAGGATGATTCTACTCATGCATATGAAGAAGATAATTTCTACTACAGCACTTGTTCATCTGAATCTACTTCTACTTCTCCATCTAAATCCATTTCTCCAACAAAAAGACGACGCTTCACCAAATTCATAGATCAAGCATCAAAAACAAAGAGGCGTGAACGTAGTAGTGACTGTGGAAGTGATGACCACAGTGATGGAGGTTCAAATCGGAGAAGAAAAAGAAGAAGAATAAGAAGATCGAAAGAAGGAAGACGTAGAGGGAGAGAAAAGAAAGAGGACCAACTGAAACAAACAGTGAAATCGAAATCATACAAAAAGAGGCATATATCAGATAGATTAAGAGCCAAGGTTATTCAAGCTGCTGACAAGTACAGATCTGAGTTTCCTTCTTTCAGAGCTGTCTTGAGGCCTCACAACTTCTGTAACAGTTTTGTGTATGTGCCAGCACGTTTTGGAGTGAAGTACATGGGAGGAGGGTCATGGAAGATAAAGCCGGAGAACGTGAATGGGAAGCAGTGGGAAGCTCGATGCTTTTACAGGAATGGATCAGGCAATGGAATGAACATAGGCGAAGGATGGGCCAAGTTCAAGATGGAGAATGAAGTCAAGGAAGGAGATGTTTGTGTGTTTGAACTCGTGAAGAAGAAGGACATTGTTTTGAGAGTTCAGATATTTCGTGTCAGACATTTTGCATATCGTTAA 1233 0.4104 MDEGTNRRCRSFLLEGKPAHFFKLILPTTILDKKLRVPKTFVNHHGNDFSTIITLHDPNAREWKIGLGKNEEDDDDAWFSEGWDKFLEYYSITKEHFLVFRYEGDSRFHWCPVHNKATTEWSVRRCNRISCTPLFESVTSKSRDNNNEHDHHRSQNDNDDDHHGIGNHFTEEYFPDDEDDSTHAYEEDNFYYSTCSSESTSTSPSKSISPTKRRRFTKFIDQASKTKRRERSSDCGSDDHSDGGSNRRRKRRRIRRSKEGRRRGREKKEDQLKQTVKSKSYKKRHISDRLRAKVIQAADKYRSEFPSFRAVLRPHNFCNSFVYVPARFGVKYMGGGSWKIKPENVNGKQWEARCFYRNGSGNGMNIGEGWAKFKMENEVKEGDVCVFELVKKKDIVLRVQIFRVRHFAYR 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1217 410 ProSiteProfiles B3 DNA-binding domain profile. 307 405 IPR003340 GO:0003677
Lele45g1217 410 Gene3D - 13 117 IPR015300 -
Lele45g1217 410 CDD B3_DNA 20 109 IPR003340 GO:0003677
Lele45g1217 410 MobiDBLite consensus disorder prediction 142 172 - -
Lele45g1217 410 PANTHER B3 DOMAIN-CONTAINING 16 400 - -
Lele45g1217 410 SUPERFAMILY DNA-binding pseudobarrel domain 302 403 IPR015300 -
Lele45g1217 410 MobiDBLite consensus disorder prediction 194 283 - -
Lele45g1217 410 Gene3D - 286 407 IPR015300 -
Lele45g1217 410 MobiDBLite consensus disorder prediction 194 210 - -
Lele45g1217 410 MobiDBLite consensus disorder prediction 263 277 - -
Lele45g1217 410 MobiDBLite consensus disorder prediction 246 262 - -
Lele45g1217 410 ProSiteProfiles B3 DNA-binding domain profile. 20 116 IPR003340 GO:0003677
Lele45g1217 410 MobiDBLite consensus disorder prediction 214 245 - -
Lele45g1217 410 SUPERFAMILY DNA-binding pseudobarrel domain 16 109 IPR015300 -
Lele45g1217 410 Pfam B3 DNA binding domain 21 108 IPR003340 GO:0003677
Lele45g1217 410 Pfam B3 DNA binding domain 312 404 IPR003340 GO:0003677
Lele45g1217 410 CDD B3_DNA 306 403 IPR003340 GO:0003677
Lele45g1217 410 SMART B3_2 308 405 IPR003340 GO:0003677
Lele45g1217 410 SMART B3_2 21 114 IPR003340 GO:0003677
Lele45g1217 410 MobiDBLite consensus disorder prediction 139 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1217 Lele-ChrLele45 22220066 22222618 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1217 18 404 B3 DNA Binding Superfamily AT3G18990 29.771 1.03e-44 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lele45g1217 B3 5.5e-16 CL0405