Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1196 ATGGACGACTATTTGAGCAGCGATGAAGATTATCATTACTCCGATCAGGGCTCCGTCGAAGGCTTCGAAAACGACGAGCCCAAATTTCAATCGGTCACTTCCAAGGGCCCCACAACTCTGGTGATTACAAGGGAATCACTTCTTGCTGCACAGAAAGATGATTTGCGCCGAGTAATGGAAATGCTATCATTAAGAGAGCACCATGCGCGTACTCTGCTTATATATCATCGTTGGGATGTGGAGAAGTTGTTTGCAGTGTATGTAGACAAGGGCAAAGCTGCCTTGTTTGCTGAAGCTGGTGTTAGTGTGGATGAACAGCGTGATCCTGACCCATCAGTTCTTTCTACAGTCATGTGTGAAATCTGCATAGAGGACGTTCCCAGTCATGAAACGACAAGAATGGACTGTGGGCACTGTTTTTGCAACAGCTGTTGGACAGCACACTTCATTGTCAAGATAAATGAGGGACAAAGTAGACGTATAAGGTGCATGGCTCACAAATGTAACGCTATTTGTGATGAAGCTGTTGTGAGAAATCTAGTCAGTAAGGAGAACCCCGATATGGCTGAGAAATTTGATCGTTTTCTTCTGGAATCCTACATTGAAGACAATAAAAGAGTCAAATGGTGTCCCAGCATCCCTCATTGTGGGAATGCAATACGTGTTGAGGATGACGAATTATGTGAGGTAGAATGTTCATGTGGTCTACAGTTCTGTTTTAGTTGCTTGTCAGAGACGCATTCCCCATGTTCTTGTTTGATGTGGGAGCTCTGGGCTAAGAAGTGTCGAGACGAATCAGAAACTGTTAATTGGATAGCGGTCCATACAAAACCTTGTCCAAAATGCCACAAACCAGTGGAGAAGAATGGCGGTTGCAACTTGGTTAGCTGTATCTGTGGTCAAGCATTTTGTTGGCTTTGTGGTGGAGCTACTGGGCGAGAACATACTTGGTCAAGTATAGCGGGTCATAGCTGTGGTCGCTACAAACAGCTAGAGAAAACAGCTGAGCGGGCGAAGCGAGATCTTTATCGATACATGCATTATCATAATCGCTATAAAGCTCACACAGACTCCTTTAGACTTGAAAGTAAATTGAAAGAGACTATACAAGTAAAGGTTGCTGTTTCAGAGGAGAGGGATTCTACACTCAGGGATTATAGTTGGGTAAATAATGGACTCTCCAGACTTTTCAGATCTAGGCGTGTCCTATCATATTCATATCCATTTGCATTTTATATGTTTGGAGATGAGCTATTTAAGGATGAAATGTCAGAAGAGCAAAGGGAAATAAAACAGCACTTATTTGAGGATCAACAACAACAGCTCGAAGCTAATGTTGAAAAGCTTTCCAAAATCCTGGAGGAACCCTTTGACCAGTTTACAGATGACAAAGTTATGGAGATAAGGATTCAAGTCATTAACCTGTCAACCATCATCGACAATCTGTGCCAGAAAATGTATGAGTGCATTGAGAATGATTTATTGGGTTCTCTTCAATTGGGCATTCACAGTATTGCTCCATACAAGTCAAAAGGCATAGAGAGGGCATCAGAACTTTCAACTTGTTGGAACCATACAGCCAATAATGCTGGTGGGACAGCAGAACTTGATCGTCCCTCCGGGTCTGGGAGTTCAGATGATATTGGATGTCCTTCTCACAAGCGTGCTAGGAAAGAAGTTGATGCTGATGCAAGTTGGAGAGGGAAGCTTCTCCTTTTAGTGATTCTATTCTATAGGGTCATGAACTTCTCAATGATGATGACATTAGGACTTGCATATGATTTGAGAAGAGTTTGGATCTCAACAATCAGCTTGCCTATCCCTAACATCAAAATCGGTGAGTTACGGATGTGTGCAGCTGCACTATTGGCCTTAACATAA 1881 0.428 MDDYLSSDEDYHYSDQGSVEGFENDEPKFQSVTSKGPTTLVITRESLLAAQKDDLRRVMEMLSLREHHARTLLIYHRWDVEKLFAVYVDKGKAALFAEAGVSVDEQRDPDPSVLSTVMCEICIEDVPSHETTRMDCGHCFCNSCWTAHFIVKINEGQSRRIRCMAHKCNAICDEAVVRNLVSKENPDMAEKFDRFLLESYIEDNKRVKWCPSIPHCGNAIRVEDDELCEVECSCGLQFCFSCLSETHSPCSCLMWELWAKKCRDESETVNWIAVHTKPCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGREHTWSSIAGHSCGRYKQLEKTAERAKRDLYRYMHYHNRYKAHTDSFRLESKLKETIQVKVAVSEERDSTLRDYSWVNNGLSRLFRSRRVLSYSYPFAFYMFGDELFKDEMSEEQREIKQHLFEDQQQQLEANVEKLSKILEEPFDQFTDDKVMEIRIQVINLSTIIDNLCQKMYECIENDLLGSLQLGIHSIAPYKSKGIERASELSTCWNHTANNAGGTAELDRPSGSGSSDDIGCPSHKRARKEVDADASWRGKLLLLVILFYRVMNFSMMMTLGLAYDLRRVWISTISLPIPNIKIGELRMCAAALLALT 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1196 626 FunFam RBR-type E3 ubiquitin transferase 248 495 - -
Lele45g1196 626 MobiDBLite consensus disorder prediction 1 30 - -
Lele45g1196 626 SUPERFAMILY RING/U-box 190 258 - -
Lele45g1196 626 Pfam IBR domain, a half RING-finger domain 190 252 IPR002867 -
Lele45g1196 626 FunFam RBR-type E3 ubiquitin transferase 114 204 - -
Lele45g1196 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 204 IPR013083 -
Lele45g1196 626 ProSiteProfiles Zinc finger RING-type profile. 119 167 IPR001841 -
Lele45g1196 626 MobiDBLite consensus disorder prediction 7 22 - -
Lele45g1196 626 Pfam Ariadne domain 331 563 IPR045840 -
Lele45g1196 626 MobiDBLite consensus disorder prediction 533 552 - -
Lele45g1196 626 SMART ibrneu5 190 252 IPR002867 -
Lele45g1196 626 SMART ibrneu5 260 325 IPR002867 -
Lele45g1196 626 Gene3D - 248 495 - -
Lele45g1196 626 SUPERFAMILY RING/U-box 116 202 - -
Lele45g1196 626 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 54 402 IPR031127 GO:0004842|GO:0016567
Lele45g1196 626 ProSiteProfiles TRIAD supradomain profile. 115 329 IPR044066 -
Lele45g1196 626 SUPERFAMILY RING/U-box 260 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1196 Lele-ChrLele45 22080444 22085164 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1196 59 524 ARIADNE family AT2G16090 75.957 0.0 755