Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1176 ATGATGGAGACCCCGAATAGATCTATATCAACAGGGTCTTCAGATTCATCAGAACAGAAGGACAAAGATATAACTTATTCAAATTCAAATTCTATCCTGCCTCCATGTCCTTTAAACCGGCAACCTTCTAGTTCCTTGGATGGTCCGGTGGCTATACTTTGGGATATTGAAAATTGTCCTGTTCCGAGTGATGTGCGCCCTGTTGATGTTGCCGGGAATGTAACAATGGCTTTGCGGGTGCATCCAATAATTAAAGGAGCTGTTGTGATGTTTTCTGCTTATGGGGATTTCAATAATTTCCCCAGGCGACTCAGAGAGGGTTGCCAAAGAACTGGTGTTAAACTCACTGATGTTCCCAGTGGGAGAAAAAATGCTGCTGATAAGGCTATCTTGGCTGACATGTTCTTGTTTGCACTTGACAACCGACCGCCTTCTTCTATAATGCTGATATCTGGAGACGTTGATTTTGCTCCTGCACTTCATGTTCTTGGTCAACGGGGATATACTATCATTCTTGTCGTCCCCGCCGGGGTGGGTATGTCGACTTCCCTTAGCAGTGCTGGTAAATTTGTCTGGGACTGGCCTAGCATTGCTCGTGGAGAAGGTTTTGTGCCTCCCTCAAAGGCTCTAGTGCCACCTCATGTTGTTCCGACCGAGGCTGTTGCAGATCTGAGAGGGTGCCATATCAATGGCAACTTTGATGGACAAAATGAAGAAGCTATTGTTTATGGAGGGATCTCACAGAACTCCCATAACTCCAAATGTTGCTCATTTGTATCACAATCTCTGTCTGAATACAAAAGTGATACATCGAATGCATCAAGCTTTCCGACGGCTTTGAGGGCACATAGCCTTCCATCCGCTCTGAACAATGTTTCAGGAGTATCATCTATGTCTTCTTCTGGTGACCATGGGGATTTGAATGGTGTGAAGTGTCAGCTGGTAAAGTTGCTTGAACTTTCTGGAGGTTTTTTGCTTCTGGCTCATGTTCTACCAGAGTATCAGAAATATTTTGGGAGGTCTATCTCTCTATCTAAATACGGGGTACGCAAATTAGCGAGTCTTTTCAAGAAAATAGGTGATCCATTTTCTTTGGAAGGGAAAGGGCCTCGGATATTTGTATATCTACGAAACTGGGAAGTGTGCCCTTTGTCCGAGGGGAGCAATGATAAGAAAGGAAAAGGGATTCAGGAAGAGAATGCAAAAATTGTCCATGCTGGTTGCTCTGTAGACGAAGAAAGAGTAGTCACAGAAGAACATGATGAGAGAAGCAACATAGACAAGGTTCACCAAGGGAAAGCAGCCAGGAGCGAAATTCATGACCGAATTCTCGAGCAATTCAAGCATGAGCTGCAAGAGATTCTCGTAATTTATTCTTGCCCAATATTCATAGATTGTTTCGATGACATTTACCGGCTACGATACAAGAAGCCACTGGAATACCGGAGACTGGGCGTGGACAAGTTAGAGGAATTGTTTAAGAAAGTGTGTGATGTGGTAGCATTGCATGAAGAACCAGTAAGCAAGAGGAAGTTCCTGGCTGCTGTGGATGGTTAG 1557 0.4432 MMETPNRSISTGSSDSSEQKDKDITYSNSNSILPPCPLNRQPSSSLDGPVAILWDIENCPVPSDVRPVDVAGNVTMALRVHPIIKGAVVMFSAYGDFNNFPRRLREGCQRTGVKLTDVPSGRKNAADKAILADMFLFALDNRPPSSIMLISGDVDFAPALHVLGQRGYTIILVVPAGVGMSTSLSSAGKFVWDWPSIARGEGFVPPSKALVPPHVVPTEAVADLRGCHINGNFDGQNEEAIVYGGISQNSHNSKCCSFVSQSLSEYKSDTSNASSFPTALRAHSLPSALNNVSGVSSMSSSGDHGDLNGVKCQLVKLLELSGGFLLLAHVLPEYQKYFGRSISLSKYGVRKLASLFKKIGDPFSLEGKGPRIFVYLRNWEVCPLSEGSNDKKGKGIQEENAKIVHAGCSVDEERVVTEEHDERSNIDKVHQGKAARSEIHDRILEQFKHELQEILVIYSCPIFIDCFDDIYRLRYKKPLEYRRLGVDKLEELFKKVCDVVALHEEPVSKRKFLAAVDG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1176 518 MobiDBLite consensus disorder prediction 1 40 - -
Lele45g1176 518 Pfam OST-HTH/LOTUS domain 444 506 IPR025605 -
Lele45g1176 518 Pfam OST-HTH/LOTUS domain 309 369 IPR025605 -
Lele45g1176 518 ProSiteProfiles OST-type HTH domain profile. 443 517 IPR025605 -
Lele45g1176 518 Gene3D - 47 195 - -
Lele45g1176 518 CDD LOTUS 444 506 - -
Lele45g1176 518 ProSiteProfiles OST-type HTH domain profile. 306 378 IPR025605 -
Lele45g1176 518 MobiDBLite consensus disorder prediction 1 15 - -
Lele45g1176 518 CDD PIN_limkain_b1_N_like 49 175 - -
Lele45g1176 518 PANTHER LIMKAIN B LKAP 15 371 IPR024768 GO:0005777|GO:0010468|GO:1903231
Lele45g1176 518 Pfam NYN domain 49 187 IPR021139 GO:0004540
Lele45g1176 518 MobiDBLite consensus disorder prediction 23 40 - -
Lele45g1176 518 Gene3D - 306 374 IPR041966 -
Lele45g1176 518 Gene3D - 438 510 IPR041966 -
Lele45g1176 518 CDD LOTUS 307 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1176 Lele-ChrLele45 21959573 21961129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1176 46 200 C2H2 Transcription Factor Family AT5G61190 40.645 3.91e-27 114