Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1172 ATGTCTGATCTATCAAATTCAGATAACACTACTGGTGAAATTAGTATGGAGAAATCCTTGAGAGAGAAGAAGAGAGATATTAGCACAGTTGATGGTTTAGAAAATCATCATCGTGAATCTCATGCCTCAGTAGAGAAAGAAAGAAGGAAGAAGATGGGGCTCTTTATGAGAGAACTTCAAGATTTTGTCCCTTCTCTCCATACTAAGGCAGACCAGGCAACCATTGTTGAAGAAACCATGAAGTACATTAAAACCCTAGAGGAAAATGTTGAAAAGTTGGAAAAACTAAAGAGAGAAGGACTCCAATCTGCCTCCAATTTTGCTAATAATCCCACTGAATCTTCTTCCTCCATGGAAACTCAAAACCCAATAGGGTTTCAAACTTGGAATTTTCCAAATGTGGTAGTGAGCATTTGTGGAGAGGAAGCTCAGTTTAGTATGTGCTTTCCCAAGAAGGAAGGCCTTTTCAGTGACATTTGCGGTGTTCTTGAGAAGCACAATATTAATGTTTTGTCTGCCAACATCTCATCTGATAATAGTAAAAGCTCGTATATGATTCAAGCACATGCAGATAAGCAGAATTCGGATCAAGTTTCAGTGGAGGAAACATTCAAGGAAGCGGCAAGAGAAATACATCTTCTGTCCCCTATATGA 654 0.3884 MSDLSNSDNTTGEISMEKSLREKKRDISTVDGLENHHRESHASVEKERRKKMGLFMRELQDFVPSLHTKADQATIVEETMKYIKTLEENVEKLEKLKREGLQSASNFANNPTESSSSMETQNPIGFQTWNFPNVVVSICGEEAQFSMCFPKKEGLFSDICGVLEKHNINVLSANISSDNSKSSYMIQAHADKQNSDQVSVEETFKEAAREIHLLSPI 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1172 217 CDD bHLH_AtbHLH_like 41 94 IPR045239 -
Lele45g1172 217 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 36 86 IPR011598 GO:0046983
Lele45g1172 217 MobiDBLite consensus disorder prediction 1 47 - -
Lele45g1172 217 MobiDBLite consensus disorder prediction 15 47 - -
Lele45g1172 217 CDD ACT_UUR-ACR-like 154 178 - -
Lele45g1172 217 Pfam Helix-loop-helix DNA-binding domain 38 87 IPR011598 GO:0046983
Lele45g1172 217 SUPERFAMILY ACT-like 142 202 IPR045865 -
Lele45g1172 217 PANTHER BHLH DOMAIN-CONTAINING PROTEIN 29 214 IPR044278 GO:0003700|GO:0006355|GO:0009960
Lele45g1172 217 SMART finulus 42 92 IPR011598 GO:0046983
Lele45g1172 217 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 35 96 IPR036638 GO:0046983
Lele45g1172 217 Coils Coil 76 103 - -
Lele45g1172 217 ProSiteProfiles ACT domain profile. 144 217 IPR002912 -
Lele45g1172 217 Gene3D - 31 99 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1172 Lele-ChrLele45 21927721 21928671 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1172 34 213 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G49770 32.645 1.00e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele45g1172 HLH 1.8e-08 No_clan