Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1167 ATGCAAGGTAACAGAAGGACTCTTGGGTCCTTTCCAGCAATTGTAAGTATGATGCAGGAGCCCAGTTCTAGTGGCACTGATATAAATCAGCAGACTTCCTTGAATCACATGCAAAATCCAGTTGATGCTCGGTTGTCAGATTTTCTGGGATCCTCTGGTGAGATTGCATGTTTACGCACCAGTGGTCCTAATGTTCGGAACTTTGATGGATGGAATGCTGGTGAACCTAGTTCTAGTGTGAATCTTCACAGTCAAGTCAATAATGATGGGCTAAAAGAAGAACATGGTTGGTCTTCGTGTGGTGCTTCTACTGAGGATGTTCTCAGACCAGAAGAACGGCAATTTGATCCAAATAATGTAACTTTACCTGGTAGCTCGAATACCAGCTTACGTAGAAATCAATCCAGAGTTCAGCCTTTCTTCTTGCAAGGTTCCAGCTCCATTCATAGAACCCAGAATGCAGCTTTAAATATGGGTTCCATTGCTAGCCCTGCTAATCATGGGAAAGGAACAGAACCTTGCAGCAGTGATAGTATTCACAATACATATGGATTCAAGAGTAAGCATACATCATTTGGTAGTGCTTCATGTGATCATATAGGAACTTCATCTGGAAGCTCTGGTTACATTGTTGGGGGAGATAATGATAATTCAAGCTCTTTAGTTAATTGGGGTTCTTCCTGCAAGAGAAAGGCTCTTGAAAGTACTTCTGGGCAGCTGTGTACTGGAGGAAGTTCAAGCTCTTTTCTAGAAGCTGAAAGCAGTTGCTGGCCTACTGGGACTCCCAATTCTAATATTGCTTCCAGCAGTTTAAATGTTTCTAGACCTTCTGAGGATATTTCTATTACTAATCCTCCAGTAGAGCAGAACCCAAGAAATGAGATGAGGCAAAGAGCTTCTGATGCATTCCCTTTGGTAGGAGTTATGGGAAATGTGAACAGGCCTCTGAGAAACTTTGATAGGAGGATGAATTATCCACAGCGACAGGAATCTAGGCATCCTAATCATTCTTCATCCTGCCAAACACCTACCTCTCACACATTTAATGATTCTCTAGAATTAAGGTTAACAGCTGGAGTTACAGCAACCAGTTCTAGTGCTCCTCAGTGTCAGTCACATGTTACGCATATCCCTGGTTTGCCAGGGAACACAGATCCTTTTCCTTGGAATGGGGCTTCTAGTTCAAGAGGAGCCAGTTCATCTACTTCTTATAACTCTGCAGAAAGAGAACTTCGGGAAGAATTGAACCTAAGAATTTTTCCAAGAGACAATACAGAGCACCCCATCCTTGTGCCTTCATCTTCTGGACTTGACCCTACAATTTGGCATATGTCATCTGGCAATGGGAACAATTCTGGTAGTGTACCTCCTCCACCTTGGACTGGATCCAGTTCAAGTGTCAACGCATTACCTAATCCGAGCTGGATTGTTCCCCATGAAGTTCCAATGCTGAGCCAGCAAAGATTATCAGAGTTCAGTCCCTGGTCCTTTTTTCCGTCAATGAACTCAGTATCTGGTGTTCATAATGTTCATTTTGCCTCGTCTTCTACTTCTTCTGGTCCTCCTTCCTTTACTCCAGACATGAGCAACCACCAATCATATCCAAGATTAGCGTCATTGATGGAGAGAAGAGGTGATGAAGTTCTTAGCACCTCCCATTCATTGCGGGCTTTAGCTGTTGACATTGAGGGGAGACGCCGATTGATATCTGAGATTCGCCAAGTCTTAAGTGCAATGCGTAGGGGTGAGAACTTACGAGCTGAGGATTATATGCTCTTTGACCCTTTCATATATCATGGTATGGCTGAACTGCATGATAGGCACAGGGACATGCGCCTTGATGTTGATAACATGTCTTACGAGGAATTGCTGGCATTGGAGGAGCGCATTGGAGATGTGAGCACCGGATTGAGCGAGGATACCATTATGAGGTTGATGAAACATCGGATCTATGTGTCTGTCATGACACTGTCTTCTACAGATCTGGAACCTTGTTGTGTTTGTCAGGAGCAATACGCCGATGGGGAGGACGTAGCCTCACTAGACTGTGGACACGAATTCCACACCGACTGCGTCAAGCAGTGGCTGATGCAGAAGAACCTGTGCCCCATTTGCAAAACAACAGCCTTAGCAACATGA 2139 0.4432 MQGNRRTLGSFPAIVSMMQEPSSSGTDINQQTSLNHMQNPVDARLSDFLGSSGEIACLRTSGPNVRNFDGWNAGEPSSSVNLHSQVNNDGLKEEHGWSSCGASTEDVLRPEERQFDPNNVTLPGSSNTSLRRNQSRVQPFFLQGSSSIHRTQNAALNMGSIASPANHGKGTEPCSSDSIHNTYGFKSKHTSFGSASCDHIGTSSGSSGYIVGGDNDNSSSLVNWGSSCKRKALESTSGQLCTGGSSSSFLEAESSCWPTGTPNSNIASSSLNVSRPSEDISITNPPVEQNPRNEMRQRASDAFPLVGVMGNVNRPLRNFDRRMNYPQRQESRHPNHSSSCQTPTSHTFNDSLELRLTAGVTATSSSAPQCQSHVTHIPGLPGNTDPFPWNGASSSRGASSSTSYNSAERELREELNLRIFPRDNTEHPILVPSSSGLDPTIWHMSSGNGNNSGSVPPPPWTGSSSSVNALPNPSWIVPHEVPMLSQQRLSEFSPWSFFPSMNSVSGVHNVHFASSSTSSGPPSFTPDMSNHQSYPRLASLMERRGDEVLSTSHSLRALAVDIEGRRRLISEIRQVLSAMRRGENLRAEDYMLFDPFIYHGMAELHDRHRDMRLDVDNMSYEELLALEERIGDVSTGLSEDTIMRLMKHRIYVSVMTLSSTDLEPCCVCQEQYADGEDVASLDCGHEFHTDCVKQWLMQKNLCPICKTTALAT 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1167 712 SUPERFAMILY RING/U-box 647 709 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 326 347 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 269 293 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 363 407 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 387 406 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 118 133 - -
Lele45g1167 712 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 224 710 IPR045191 GO:0061630
Lele45g1167 712 Pfam Ring finger domain 665 706 IPR001841 -
Lele45g1167 712 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 628 710 IPR013083 -
Lele45g1167 712 CDD RING-H2_PA-TM-RING 665 706 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 445 466 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 330 347 - -
Lele45g1167 712 SMART ring_2 665 705 IPR001841 -
Lele45g1167 712 MobiDBLite consensus disorder prediction 108 133 - -
Lele45g1167 712 MobiDBLite consensus disorder prediction 363 378 - -
Lele45g1167 712 ProSiteProfiles Zinc finger RING-type profile. 665 706 IPR001841 -
Lele45g1167 712 FunFam E3 ubiquitin-protein ligase MBR2 632 710 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1167 Lele-ChrLele45 21911447 21915888 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1167 18 712 C3H Transcription Factor Family AT2G15530 36.671 7.74e-111 349