Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1160 ATGGCTCAGGTTCAGGTTCCGCCTCAAAATGTGATTCCGGGAGCTAACGGTGCTCCTGCAACTGACGGGGCAAACCAGTTCGTGTCGCTCTATGTTGGAGATCTTGATGTTAACGTTACGGAATCCCAGCTCTACGATATGTTTAACCAAGCTGGTCAGGTTGTCTCCGTTAGGGTCTGTAGAGATTTGACCAGCCAGCGATCACTTGGTTACGGTTATGTCAATTTTAGCTCGGCGCCAGAAGCTGCCAGAGCAATGGATTTGCTGAACTTCACTCCTGTTAATAACAAGCCAATCCGTATTATGTATTCACATCGTGATCCTAGTATTCGAAGAAGTGGGTCTGGAAATATATTTATTAAGAATCTTGATAAGGCAATTGACCACAAAGCTTTGCATGATACCTTCTCTGCATTTGGGAATATCCTTTCTTGCAAAGTAGCTACAGATTCATCTGGCCAGTCAAAGGGATATGGCTTTGTGCAATTTGATAACGAGGAATCTGCTCAAAAGGCCATAGAGAAATTGAATGGTATGCTGTTGAATGATAAGCAGGTGTATGTGGGACCCTTTCTTCGCAAGCAAGAGAGAGAAAGTGCTGTTGAGAAAACAAAATTTAACAACGTTTTTGTAAAGAATTTGTCTGAAACAACCACTGATGAAGATTTAAAGAGAATTTTTGGTGAATTTGGAACAATTACAAGTGCTGTGGTTATGAGAGACGCTGATGGCAAATCTAAGTGCTTTGGATTTGTGAACTTTGAGAATGCTGCTGCTGCTGCCAGGGCTGTTGATTCTCTTAATGGGAAGAAAATTGATGACAAGGAATGGTACGTTGGAAAAGCTCAAAAGAAATCCGAAAGGGAGCTTGAATTGAAAAATCGATTTGAACAGAGCATGAAAGAAGCCGCTGATAAATATCAAGGGGCTAACTTGTATGTCAAAAATTTAGATGATAGCATTAGTGATGATAAACTTAGGGAGCTCTTCTCTCCATTTGGTAACATCACCTCATGCAAGGTCATGAGAGACCCCAATGGGATAAGCCGAGGATCAGGGTTTGTTGCATTCACGACTCCTGAAGAGGCTTCAAGAGCTCTTTTGGATTTGAATGGAAAAACGGTAGTAAGCAAGCCTCTATATGTTGCTTTAGCTCAACGTAAAGAAGATAGAAGAGCTAGACTGCAGGCGCAATTCGCTCAAATGCGGCCTGTTGCAATGGCACCATCTTTAGCTCCCCGTATGCCTATGTACCCCCCTGGTGGTCCAGGTATTGGACAACAAATATTTTATGGTCAAGGCCCTCCCGCTATCATTCCTTCCCAGCCGGGATTTGGGTATCAACAACAACTTGTACCTGGAATGAGGCCTGGAGCAGGTCATATGCCAAATTTCTTTATGCCAATGGTTCAGCAAGGGCAGCAAGGCCAACGTCCAGGTGGAAGACGTGCAGGGGCGGTCCAGCAGAACCAGCAGCCGGTTCCTCTAATGCAGCAGCAGATGCTTCCAAGGGGGCGTATGTACCGATATCCTCCTGGTAGGGGTCTGCCTGATGTTGGTGGAATGCCAATTCGTGATGCTGCTCTGCCCCAGCATATTCCTATAGGGGCTCTTTCTTCGGCCCTGGCAAATGCTAATCCAGAGCATCAGAGGACGATGCTGGGCGAGAATCTTTACCCACTTGTGGAACTGTTGGAGCCTGAAAACGCGGCAAAAGTGACTGGCATGCTTCTGGAGATGGACCAGACTGAGGTTCTGCACTTGCTCGAATCACCGGAGGCTTTGAAATCAAAGGTGGCCGAGGCAATGGATGTTCTGAGGAATGTTGCTCAGCAACAGCAAGCTGGTGGACCCGCTGATCAATTGGCCTCGTTATCACTTAATGACAATCTTGTTTCTTGA 1902 0.4569 MAQVQVPPQNVIPGANGAPATDGANQFVSLYVGDLDVNVTESQLYDMFNQAGQVVSVRVCRDLTSQRSLGYGYVNFSSAPEAARAMDLLNFTPVNNKPIRIMYSHRDPSIRRSGSGNIFIKNLDKAIDHKALHDTFSAFGNILSCKVATDSSGQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAVEKTKFNNVFVKNLSETTTDEDLKRIFGEFGTITSAVVMRDADGKSKCFGFVNFENAAAAARAVDSLNGKKIDDKEWYVGKAQKKSERELELKNRFEQSMKEAADKYQGANLYVKNLDDSISDDKLRELFSPFGNITSCKVMRDPNGISRGSGFVAFTTPEEASRALLDLNGKTVVSKPLYVALAQRKEDRRARLQAQFAQMRPVAMAPSLAPRMPMYPPGGPGIGQQIFYGQGPPAIIPSQPGFGYQQQLVPGMRPGAGHMPNFFMPMVQQGQQGQRPGGRRAGAVQQNQQPVPLMQQQMLPRGRMYRYPPGRGLPDVGGMPIRDAALPQHIPIGALSSALANANPEHQRTMLGENLYPLVELLEPENAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQQQAGGPADQLASLSLNDNLVS 633
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1160 633 CDD RRM1_I_PABPs 29 108 - -
Lele45g1160 633 CDD RRM3_I_PABPs 206 285 - -
Lele45g1160 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 207 284 IPR000504 GO:0003723
Lele45g1160 633 Gene3D - 192 291 IPR012677 -
Lele45g1160 633 TIGRFAM PABP-1234: polyadenylate binding protein, human types 1, 2, 3, 4 family 29 607 IPR006515 GO:0003723
Lele45g1160 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 188 IPR000504 GO:0003723
Lele45g1160 633 SUPERFAMILY RNA-binding domain, RBD 204 292 IPR035979 GO:0003676
Lele45g1160 633 SUPERFAMILY RNA-binding domain, RBD 29 197 IPR035979 GO:0003676
Lele45g1160 633 FunFam Polyadenylate-binding protein 197 292 - -
Lele45g1160 633 Gene3D - 18 116 IPR012677 -
Lele45g1160 633 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 534 611 IPR002004 GO:0003723
Lele45g1160 633 Gene3D - 292 395 IPR012677 -
Lele45g1160 633 Gene3D - 117 189 IPR012677 -
Lele45g1160 633 SMART poly_2 546 609 IPR002004 GO:0003723
Lele45g1160 633 FunFam Polyadenylate-binding protein 8 111 - -
Lele45g1160 633 Pfam Poly-adenylate binding protein, unique domain 542 606 IPR002004 GO:0003723
Lele45g1160 633 FunFam Polyadenylate-binding protein 293 398 - -
Lele45g1160 633 SUPERFAMILY RNA-binding domain, RBD 305 402 IPR035979 GO:0003676
Lele45g1160 633 SMART rrm1_1 29 102 IPR000504 GO:0003723
Lele45g1160 633 SMART rrm1_1 208 280 IPR000504 GO:0003723
Lele45g1160 633 SMART rrm1_1 117 189 IPR000504 GO:0003723
Lele45g1160 633 SMART rrm1_1 311 383 IPR000504 GO:0003723
Lele45g1160 633 FunFam Polyadenylate-binding protein 530 612 - -
Lele45g1160 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 28 106 IPR000504 GO:0003723
Lele45g1160 633 CDD RRM4_I_PABPs 309 387 - -
Lele45g1160 633 CDD RRM2_I_PABPs 114 190 IPR045305 -
Lele45g1160 633 PANTHER RNA BINDING PROTEIN 27 90 - -
Lele45g1160 633 SMART rrm2_1 29 102 IPR003954 GO:0003676
Lele45g1160 633 SMART rrm2_1 311 383 IPR003954 GO:0003676
Lele45g1160 633 SMART rrm2_1 117 189 IPR003954 GO:0003676
Lele45g1160 633 SMART rrm2_1 208 280 IPR003954 GO:0003676
Lele45g1160 633 FunFam Polyadenylate-binding protein 117 190 - -
Lele45g1160 633 SUPERFAMILY PABC (PABP) domain 491 627 IPR036053 GO:0003723
Lele45g1160 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 312 380 IPR000504 GO:0003723
Lele45g1160 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 209 277 IPR000504 GO:0003723
Lele45g1160 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 30 100 IPR000504 GO:0003723
Lele45g1160 633 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 186 IPR000504 GO:0003723
Lele45g1160 633 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 310 387 IPR000504 GO:0003723
Lele45g1160 633 Gene3D - 530 613 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1160 Lele-ChrLele45 21862765 21866563 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1160 1 628 Eukaryotic Initiation Factors Gene Family AT4G34110 71.855 0.0 887