Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1104 ATGACGAGTGCTTCGGAGCTATTCTACAATCGGAGGTATCGTTTGGGACGAACCTCTGATTATCTGGGGAACGATTCGTTGCCCGATAGATTCCTTCACCCCGATATCAATAACCGTCGCCATCATCACCATCTACATGATTTCAGTGATGGTGAGACTCTCCGACGGTCCACGCCAACGCGCCGGTTATTTCATCGTTTGTCCTCCACGGAGCGAGAGTCAGCTAGACTTGACCTAAGGCATAACCGGTCTCTTTCAAACACGGCAAGTTCTGCTGAAAATGTTAGCAGTTTCAGGGGCCCTAGAGTAACTGGCAATGACAGGCTACCCATAGCTGTGGTACATGCAAGGGCAAGACTCCTTCAGAGGTTGAGTGCAGAACCTCCCTCTAGAAACAGGCAAAGGGATAGAGTTTTTCTAGATATTGATGACACGAGGCATACTAACTTGAGGGATGAAGAGAGCAGTGAATCATCAACTACTGTTTTAGCTGAGGGTTTACCATTAACTGACTTAACTTTACAAAGGGAAAGGTTCCAACTCTCACATGAAGTGAACAAAAAACCACCTGGGCTCAACCAGGAGGCCATGGACCGTTTGCATATGGAAATATTTGGCATCAGGGAAACACAAACGGAAGAATTGGAATCCAGAGTACTGCAGGATTGTGGCATATGCCTAGAAACTTTTCTGGAAGGAGATAAGCTGATACGCTTGCCATGTGGGCACAGATTCCACTATGTGTGTTTGAATCCATGGGTTAGAAAATGTGGGGATTGCCCATTTTGTAGAAGAGGTATATATTTTGTCGTTGTTTCTGGTGTTGTTTGTATTGCTATTTTTGTGGTTATGGAAAATACCATGAAGTTGCATTTATTTCGTAGCCATGCGGATTTGTACTAA 903 0.4485 MTSASELFYNRRYRLGRTSDYLGNDSLPDRFLHPDINNRRHHHHLHDFSDGETLRRSTPTRRLFHRLSSTERESARLDLRHNRSLSNTASSAENVSSFRGPRVTGNDRLPIAVVHARARLLQRLSAEPPSRNRQRDRVFLDIDDTRHTNLRDEESSESSTTVLAEGLPLTDLTLQRERFQLSHEVNKKPPGLNQEAMDRLHMEIFGIRETQTEELESRVLQDCGICLETFLEGDKLIRLPCGHRFHYVCLNPWVRKCGDCPFCRRGIYFVVVSGVVCIAIFVVMENTMKLHLFRSHADLY 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1104 300 MobiDBLite consensus disorder prediction 78 104 - -
Lele45g1104 300 CDD RING-H2_PA-TM-RING 222 264 - -
Lele45g1104 300 Pfam Ring finger domain 222 264 IPR001841 -
Lele45g1104 300 SMART ring_2 223 263 IPR001841 -
Lele45g1104 300 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 268 IPR013083 -
Lele45g1104 300 PANTHER SI:CH211-59O9.10 65 267 - -
Lele45g1104 300 SUPERFAMILY RING/U-box 222 270 - -
Lele45g1104 300 MobiDBLite consensus disorder prediction 81 101 - -
Lele45g1104 300 ProSiteProfiles Zinc finger RING-type profile. 223 264 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1104 Lele-ChrLele45 21478366 21480848 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1104 1 267 C3H Transcription Factor Family AT1G49850 38.148 4.82e-37 130