Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1091 ATGGCTTTGGAGGCTCTGAATTCTCCTTCTGCTACCCCCAATCCTGTGTTCAAAGAAGATGATGATCTTCAGTCGCTGGACGCTTGGACCAAGGGCAAGCGATCTAAACGTCACCGTTTTGATCAGAATCCTCCTTCTGCTGAGGAAGAGTATCTCGCTGTCTGTCTCCTCATGCTCGCCCACGGTGGCGGCAACGCTAAATCCAATACGACGTCCTCTTCCCCTGATCTGACGAAGCTTTCTCATAAGTGCTCTGTCTGTAACAAGTCCTTCTCCTCCTACCAAGCGCTCGGAGGACACAAGGCCAGCCACCGTAAGTCCTCCTCCTCCGCCTCCGATCATCACCCTCCCGCCGATAATTCATCCGCCTCCATCTCCACCGCTGCAGTAGGTGGCACCGGGAAGGTGCATCAGTGTTCCATCTGTTACAAGTCTTTCCCGACCGGTCAGGCCCTCGGTGGTCACAAGCGCTGCCACTATGACGGCGGAAACGCTAACAACAGCGGTACCGGTGGAACCACGGTGATCACATCGTCTGAGGGGAACACCTCATCGGTCACTCACACCAACCGCGGCTTTGACCTGAACCTCCCCGCGCCTTTGACCGACTTCTCCCCTGCTGGGTTCATCGGCGCCGCCGCCAAGAGTGTCAAGATCGGAGAAGAAGAGGTGGAGAGCCCGTTACCGACGGCCGTCACCAAGAAGCCTCGTCTGTTCATGGACGGAGAATGA 732 0.5656 MALEALNSPSATPNPVFKEDDDLQSLDAWTKGKRSKRHRFDQNPPSAEEEYLAVCLLMLAHGGGNAKSNTTSSSPDLTKLSHKCSVCNKSFSSYQALGGHKASHRKSSSSASDHHPPADNSSASISTAAVGGTGKVHQCSICYKSFPTGQALGGHKRCHYDGGNANNSGTGGTTVITSSEGNTSSVTHTNRGFDLNLPAPLTDFSPAGFIGAAAKSVKIGEEEVESPLPTAVTKKPRLFMDGE 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1091 243 MobiDBLite consensus disorder prediction 1 45 - -
Lele45g1091 243 ProSitePatterns Zinc finger C2H2 type domain signature. 84 104 IPR013087 -
Lele45g1091 243 ProSitePatterns Zinc finger C2H2 type domain signature. 139 159 IPR013087 -
Lele45g1091 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 137 159 IPR013087 -
Lele45g1091 243 SMART c2h2final6 137 159 IPR013087 -
Lele45g1091 243 SMART c2h2final6 82 104 IPR013087 -
Lele45g1091 243 MobiDBLite consensus disorder prediction 98 126 - -
Lele45g1091 243 Gene3D Classic Zinc Finger 80 159 - -
Lele45g1091 243 ProSiteProfiles Zinc finger C2H2 type domain profile. 82 109 IPR013087 -
Lele45g1091 243 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 35 199 IPR044653 GO:0003700
Lele45g1091 243 Pfam C2H2-type zinc finger 136 161 - -
Lele45g1091 243 Pfam C2H2-type zinc finger 82 106 - -
Lele45g1091 243 SUPERFAMILY beta-beta-alpha zinc fingers 82 159 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1091 Lele-ChrLele45 21377225 21377956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1091 1 238 C2H2 Transcription Factor Family AT1G27730 48.400 2.71e-56 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele45g1091 zf-C2H2_6 3.6e-12 CL0361