Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1049 ATGAGGTTTGAAGGAGAAGTCCACACTGAAGCAGAGGAGGAGATTCAAGAGAAAGAAGTGAATTCAATGGGGCATTCGATCTGCGGTGGCGGGTCTCCACAGCAACTGAAACTGGTGGTTGGGTATGCCTTGACTTCCAAGAAGAAGAAGAGCTTTTTAAAGCCCAAGTTTATCAGTCTTGCCAGGAGTAAGGGGATATCTTTTGTTTCCATTGATCCAAGCAAGCCATTGTCAGAACAAGGTCCCTTTGACATTGTTTTGCATAAGTCTGACAGGCTGTGTGTTCTTTTTAGCTGTCAGGGAAGGAGTGGCGTGAAGTTATTGAGGCAAAAACACCCTTCAGTTATCATTGTTGATCCTCCAGATGCAATTCAACATTTACAAAATCGCCAGTCCATGCAGCAAGTAGTGGCAGATTTAAACTTATCTGATTGCAATGGCAAAGTAGGGGTTCCGCGACACTTGGTTGTCACAAAAGACCAGTCATCCATTCCTTATGAAGTTGCTAAAGCTGGAATTAAGTTGCCACTAGTTGTAAAACCTTTAGTTGTGGATGGCAGTGCAAAGTCACACGAACTATTTCTTGCTTATGATGAATTCTCTCTTTCAACTCTTGAACCTCCATTGGTTTTGCAGGAGTTTGTCAATCATGGTGGTCTTCTCTTTAAGATTTATATAATTGGGGAAACCATAAAGGTTGTTAGGCGTTTCTCTCTGCCTAATATCAGTAAACATGACATGTCAAAAGTGGCTGGTGTAATCCAATTTCCAAGGGTTTCAAGTGCTGCGGCTTCTGCAGATGATGCTGATTTAGATCCCAGTATTGCCGAATTTCCGCCAAAACCCTTATTGGAGAGGCTTGCGAGGGAGCTTCGTCAGAGATTGGGTCTCCACTTGTTCAACATGGATATGATTCGGGAACACGGGACCAAGGATGTCTTTTATGTCATTGATATCAACTACTTTCCTGGCAAGTACAGTTTATTTATTGATATGGAAAAGTGCCAGAATAAAGTAAGAGCAAAATACTTGGCCATGTTAATGCCCTCAGCAGAAATATTAGCGATATCAGAACAGAAAGCTGACATAACTCCGTTTCTATTATGCACGGTTTTTCCTCCTGTCATATGTGCAAAAATGGAATGTCTGTTAATCTCAGCCATGTCTGCGAGCTCATCAAATGCAGGGGGAAGGAAAAGTAAGGGTCGCCAGAAGATTGAGATAAAGAAGATGGAGAATGAAAGCAACCTGCAAGTCACCTTCTCGAAGCGTCGAGCAGGTCTGTTCAAGAAGGCTAGTGAGCTTTGCACTCTCTGCGGCGTTGAGGTTGCCCTAATCGTCTTCTCTCCCGGAGAAAAGGCTTTCTCGTTCGGCCATCCAAGTCTCGATGCTGTTCTGGACCGTTACCTGAATGGTAGCGTGCCGCCACAGCCTCCATCAGCTTCCATGCAAATGATGGAGGCTCACCGCAGCGCTGCCGTCAATGAACTTAACGCTCATCTCACTCGTCTCGTCGAAGAGCTCGAGGTGGAGAAGAAGCGCGGAGAAGAACTCGACAGGAGGTTGAAGGAGATGGGGACCAAGTTCGGGTTTGCTCAACCGATTCGTGACCTCAATAGGGATCAGCTAGAGATCTTGAAGACGCGTATGGAGGATATGAAGAAGAACATGTGGCGCCGAGCTGATGAGACTGCTATGTTCCACACTGGTTCAAGTTCTAATATTCCAGCTCAGTTCTACGTGGGTGGCGACTCTTCCTCCGGCTTCCATGTGCCGCCACCGCCTCAGGCACCACTGCCAATGCAGAATACGGCAGCTCCACCACCTGCAGCTGATCAGATGTTTCCTTCCCCTTTCCCGCAGCCAATCCTGCAGCAACCTCCGGTGCAACCTAAGGAATTACATTTCATGTTCGTCGCAATGATGAGCATGGTGCTCATCGTTCATTTGGACCATTCGATTGGGCCAAGTTCAGCCATGGCAGATGAGGTTCCAGAACAAAAAGTCGAAAACAAAAGGGTGGAGGAGGAGGAGAAGCCAGCAGAAAAGGAACTGATGGCTAAGATGAAGGAGATCATGGAGAAGGAGGAGATGCTAGCAACATTGGATAAACTTATTCACAACATTGATGAATTGTTAAGAGAGAATATGAAGGATCAAGATACAACCCTTGCATTGGACTATTTGAGTAGTGAAAAGTGCACCTGTATAGTATCCAAATGCGTCCTTCTGAATCTTACATGTCTTTGGGAGAAGGGTTTTGGCATCGTTGAAGCAACTCAGGCAAGAATCCGCTCCAAGTCAGCTCGGCACATCCCTTGA 2322 0.4595 MRFEGEVHTEAEEEIQEKEVNSMGHSICGGGSPQQLKLVVGYALTSKKKKSFLKPKFISLARSKGISFVSIDPSKPLSEQGPFDIVLHKSDRLCVLFSCQGRSGVKLLRQKHPSVIIVDPPDAIQHLQNRQSMQQVVADLNLSDCNGKVGVPRHLVVTKDQSSIPYEVAKAGIKLPLVVKPLVVDGSAKSHELFLAYDEFSLSTLEPPLVLQEFVNHGGLLFKIYIIGETIKVVRRFSLPNISKHDMSKVAGVIQFPRVSSAAASADDADLDPSIAEFPPKPLLERLARELRQRLGLHLFNMDMIREHGTKDVFYVIDINYFPGKYSLFIDMEKCQNKVRAKYLAMLMPSAEILAISEQKADITPFLLCTVFPPVICAKMECLLISAMSASSSNAGGRKSKGRQKIEIKKMENESNLQVTFSKRRAGLFKKASELCTLCGVEVALIVFSPGEKAFSFGHPSLDAVLDRYLNGSVPPQPPSASMQMMEAHRSAAVNELNAHLTRLVEELEVEKKRGEELDRRLKEMGTKFGFAQPIRDLNRDQLEILKTRMEDMKKNMWRRADETAMFHTGSSSNIPAQFYVGGDSSSGFHVPPPPQAPLPMQNTAAPPPAADQMFPSPFPQPILQQPPVQPKELHFMFVAMMSMVLIVHLDHSIGPSSAMADEVPEQKVENKRVEEEEKPAEKELMAKMKEIMEKEEMLATLDKLIHNIDELLRENMKDQDTTLALDYLSSEKCTCIVSKCVLLNLTCLWEKGFGIVEATQARIRSKSARHIP 773
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1049 773 CDD MADS_MEF2_like 402 473 IPR033896 GO:0000977|GO:0045944
Lele45g1049 773 SMART madsneu2 401 460 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 Coils Coil 536 556 - -
Lele45g1049 773 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 410 457 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 Coils Coil 494 525 - -
Lele45g1049 773 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase pre-ATP-grasp domain 39 124 IPR041429 -
Lele45g1049 773 Coils Coil 695 722 - -
Lele45g1049 773 SUPERFAMILY SRF-like 402 476 IPR036879 GO:0003677|GO:0046983
Lele45g1049 773 PANTHER INOSITOL-TETRAKISPHOSPHATE 1-KINASE 35 326 IPR008656 GO:0000287|GO:0005524|GO:0032957|GO:0047325|GO:0052725|GO:0052726
Lele45g1049 773 Gene3D - 120 324 - -
Lele45g1049 773 Gene3D - 413 479 IPR036879 GO:0003677|GO:0046983
Lele45g1049 773 SUPERFAMILY Glutathione synthetase ATP-binding domain-like 120 329 - -
Lele45g1049 773 ProSiteProfiles ATP-grasp fold profile. 141 348 IPR011761 GO:0005524|GO:0046872
Lele45g1049 773 FunFam Agamous-like MADS-box protein AGL62 413 478 - -
Lele45g1049 773 PRINTS MADS domain signature 403 423 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 PRINTS MADS domain signature 423 438 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 PRINTS MADS domain signature 438 459 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 ProSiteProfiles MADS-box domain profile. 401 461 IPR002100 GO:0003677|GO:0046983
Lele45g1049 773 Pfam Inositol 1,3,4-trisphosphate 5/6-kinase ATP-grasp domain 146 325 IPR040464 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1049 Lele-ChrLele45 21051924 21067022 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1049 398 593 Type I MADS-box Gene Family AT5G60440 48.293 2.10e-52 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele45g1049 Ins134_P3_kin 1.3e-77 CL0179