Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1042 ATGAAGAGAAAGTCCAGTTCAGGTCGCCAAAAGATCCCTATTGAGAAAATACCAAAGAAAAGCCATCTTCAAGTCACATTCTCAAAGCGTCGCTCAGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACACTCTGTGGTGTAGAAATAGCCATCATCGTCTTCTCTCCGGCGGACAAGGCCTTCTCCTTCGGGCACCCGGAGGTGGAATCCATCATCGATCGCTATATCACCCGAAACCCTCCGTCGGAATCCAGCTCTCACCCTCTAGTGGAGGCTCACCGGAAAGCGAACGTCCGGGAGCTGAACATGCAGCTAACACAGGTTCTTGGGCAGCTGGAGATGGAGAGGAAGCGAGGGGAGGAGCTGGACCAGGTGAGGAAGGCCAGGCAGAGACAGTTCTGGTGGGAGAGCCCTATTGAAGAATTAGGGTTTAATGAGTTGCAGCAAGTTCTGGTTTCAATGGAGGAACTGAAGAAGGAGTTAGGGAAGATGGCGAGCAAGATGTTGATGATGGAGCATAATAATAGTTCGGCTGCTACTGATCATTCATCAGTGATTATAGGAGGAGGGCAACAACATGGTGGTGGACTTGGACGCTATAATAATAATAACTATGTTTTCGAGAATAAACATGTTATGAACAACATGAATGCTGCTTCTTCGTTGTCCAGTAATATTCTTCCTACTCAACATGCCTATAACAATCTCAATTGTAGGCATGGATATCTATGA 732 0.4727 MKRKSSSGRQKIPIEKIPKKSHLQVTFSKRRSGLFKKASELCTLCGVEIAIIVFSPADKAFSFGHPEVESIIDRYITRNPPSESSSHPLVEAHRKANVRELNMQLTQVLGQLEMERKRGEELDQVRKARQRQFWWESPIEELGFNELQQVLVSMEELKKELGKMASKMLMMEHNNSSAATDHSSVIIGGGQQHGGGLGRYNNNNYVFENKHVMNNMNAASSLSSNILPTQHAYNNLNCRHGYL 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1042 243 SUPERFAMILY SRF-like 8 85 IPR036879 GO:0003677|GO:0046983
Lele45g1042 243 CDD MADS_MEF2_like 8 75 IPR033896 GO:0000977|GO:0045944
Lele45g1042 243 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 63 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 Gene3D - 88 184 - -
Lele45g1042 243 FunFam Agamous-like MADS-box protein AGL62 19 85 - -
Lele45g1042 243 Coils Coil 154 174 - -
Lele45g1042 243 PRINTS MADS domain signature 29 44 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 PRINTS MADS domain signature 44 65 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 PRINTS MADS domain signature 9 29 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 ProSiteProfiles MADS-box domain profile. 7 67 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 Gene3D - 19 87 IPR036879 GO:0003677|GO:0046983
Lele45g1042 243 SMART madsneu2 7 66 IPR002100 GO:0003677|GO:0046983
Lele45g1042 243 PANTHER MADS BOX PROTEIN 9 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1042 Lele-ChrLele45 21000236 21000967 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1042 6 161 Type I MADS-box Gene Family AT2G24840 55.975 1.79e-55 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele45g1042 SRF-TF 3.2e-23 No_clan