Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1026 ATGGGCTTTCGACGTTCTTTCATTGTGACACGAGCCTCATGCCCCTTATTTCTTCGCGTTCAATTTCCTCTCCGTTTCTTCTCTGAGAAAGGCTATCAAAACTTCTTCAAGATGCAAATCTTCGTTAAGACCCTCACCGGCAAGACCATTACTCTCGAGGTCGAGAGCTCCGACACCATCGATAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATTCCCCCAGATCAGCAGAGGCTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGTACCCTTGCTGACTACAACATCCAAAAGGAATCCACCCTCCACCTCGTTCTCCGTCTCCGTGGTGGCATGCAGATCTTCGTCAAGACTCTTACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCTGACACCATCGACAACGTTAAGGCCAAGATCCAAGACAAGGAGGGAATCCCCCCAGACCAGCAGAGGTTGATCTTCGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTCGCCGACTACAACATCCAGAAAGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTTGTCAAGACCCTCACCGGCAAGACCATCACCTTGGAGGTCGAGAGCTCCGACACCATTGACAACGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTTGCCGGAAAGCAGCTTGAGGATGGCCGCACCCTTGCCGACTACAACATCCAGAAGGAATCCACCCTCCACCTTGTCCTCCGTCTCCGTGGTGGTATGCAAATCTTCGTTAAGACCCTCACAGGGAAGACCATCACCTTGGAGGTGGAGAGCTCAGACACCATTGATAACGTGAAGGCCAAAATCCAAGACAAGGAGGGTATCCCGCCAGACCAACAGAGGCTCATCTTCGCTGGTAAGCAGCTTGAGGATGGCCGAACTTTGGCTGATTATAACATCCAAAAGGAGTCAACCCTCCACCTTGTCTTGCGTCTCCGTGGTGGTATGCAGATTTTCGTGAAGACCCTTACAGGGAAGACTATCACTCTCGAGGTTGAGAGCTCAGACACCATTGACAACGTGAAGGCCAAGATTCAAGATAAGGAGGGTATTCCACCAGACCAGCAGAGGTTGATTTTCGCTGGAAAGCAGCTCGAAGATGGACGCACACTTGCAGACTACAACATTCAGAAGGAATCCACCCTTCACCTTGTCCTTCGTCTCAGAGGAGGCATGCAGATTTTTGTGAAGACCTTGACTGGCAAAACCATCACTTTGGAGGTGGAGAGCTCGGACACTATTGACAATGTCAAGGCCAAGATTCAGGACAAGGAGGGGATCCCACCAGACCAGCAGAGGCTTATCTTTGCAGGGAAGCAGCTTGAAGATGGAAGGACCCTTGCTGATTACAACATCCAGAAGGAGTCCACCCTTCACCTTGTGCTTCGCCTCCGTGGTGGTAACTGA 1485 0.5212 MGFRRSFIVTRASCPLFLRVQFPLRFFSEKGYQNFFKMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGN 494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1026 494 FunFam Polyubiquitin 3 38 113 - -
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 368 393 IPR019954 -
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 265 341 IPR029071 -
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 37 113 IPR029071 -
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 190 265 IPR000626 GO:0005515
Lele45g1026 494 Gene3D - 418 494 - -
Lele45g1026 494 Gene3D - 191 265 - -
Lele45g1026 494 Gene3D - 266 341 - -
Lele45g1026 494 Gene3D - 32 113 - -
Lele45g1026 494 Gene3D - 114 190 - -
Lele45g1026 494 Gene3D - 342 417 - -
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 266 341 IPR000626 GO:0005515
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 342 417 IPR000626 GO:0005515
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 418 493 IPR000626 GO:0005515
Lele45g1026 494 FunFam Polyubiquitin 3 114 189 - -
Lele45g1026 494 CDD Ubl_ubiquitin 266 341 - -
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 140 165 IPR019954 -
Lele45g1026 494 CDD Ubl_ubiquitin 114 189 - -
Lele45g1026 494 FunFam Polyubiquitin 3 190 265 - -
Lele45g1026 494 PRINTS Ubiquitin signature 48 68 IPR019956 -
Lele45g1026 494 PRINTS Ubiquitin signature 90 111 IPR019956 -
Lele45g1026 494 PRINTS Ubiquitin signature 69 89 IPR019956 -
Lele45g1026 494 FunFam Polyubiquitin 3 418 493 - -
Lele45g1026 494 SMART ubq_7 38 109 IPR000626 GO:0005515
Lele45g1026 494 SMART ubq_7 342 413 IPR000626 GO:0005515
Lele45g1026 494 SMART ubq_7 114 185 IPR000626 GO:0005515
Lele45g1026 494 SMART ubq_7 418 489 IPR000626 GO:0005515
Lele45g1026 494 SMART ubq_7 190 261 IPR000626 GO:0005515
Lele45g1026 494 SMART ubq_7 266 337 IPR000626 GO:0005515
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 341 417 IPR029071 -
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 113 189 IPR029071 -
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 189 265 IPR029071 -
Lele45g1026 494 FunFam Polyubiquitin 3 266 341 - -
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 292 317 IPR019954 -
Lele45g1026 494 CDD Ubl_ubiquitin 418 493 - -
Lele45g1026 494 CDD Ubl_ubiquitin 342 417 - -
Lele45g1026 494 Pfam Ubiquitin family 420 491 IPR000626 GO:0005515
Lele45g1026 494 Pfam Ubiquitin family 268 339 IPR000626 GO:0005515
Lele45g1026 494 Pfam Ubiquitin family 116 187 IPR000626 GO:0005515
Lele45g1026 494 Pfam Ubiquitin family 344 415 IPR000626 GO:0005515
Lele45g1026 494 Pfam Ubiquitin family 192 263 IPR000626 GO:0005515
Lele45g1026 494 Pfam Ubiquitin family 40 111 IPR000626 GO:0005515
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 216 241 IPR019954 -
Lele45g1026 494 FunFam Polyubiquitin 3 342 417 - -
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 38 113 IPR000626 GO:0005515
Lele45g1026 494 CDD Ubl_ubiquitin 190 265 - -
Lele45g1026 494 ProSiteProfiles Ubiquitin domain profile. 114 189 IPR000626 GO:0005515
Lele45g1026 494 CDD Ubl_ubiquitin 38 113 - -
Lele45g1026 494 SUPERFAMILY Ubiquitin-like 417 493 IPR029071 -
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 444 469 IPR019954 -
Lele45g1026 494 ProSitePatterns Ubiquitin domain signature. 64 89 IPR019954 -
Lele45g1026 494 PANTHER UBIQUITIN 190 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1026 Lele-ChrLele45 20874590 20876886 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1026 418 493 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 100.000 2.12e-46 156