Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1016 ATGCACAGGGTGACTGGTAGGCGCAGAGGGCCTCACCTGGCTCTATCTCGAGGCTATGGTATTGGATTTGGACACGCACACGCGAATCCAATTCTTTTACTTCATTTTGTTGTGCCCTCCAATTCTTCCACCTTATTTGGCGCCGAATTGAGCTCCTTCGATAGTGGCGAAGAAAAATCTTGCTCCACTTCTCACCCTGTCGAGGAGGGCCAAAACCCTAACCCTAATCACAACCCCAACTCTTCTCTTTTTCTTTTTCACTCGTCTCTGGATTCTTTGATCTCCATGGACTCTCAAAGGTTGTTGCTTTCCCGAGAAAACCCTAGGCCCCTGGGTTTTCCTACTGGGCGAGTACTCTCTTCTGTCACTGCAAAATCCGTGCCCGCTGAGATGGCTCAGAAGCCGGTTCCTCCTGCGATATTGGAACGGTTCAAGGCTCTGCTCAAGCGGCGCGACGATGAACGGAGGGATTTGTCCGACGACGACGCGCCACCGCCGTCCACTGAGGAGATTGTGCAGCTTTACGAGATAGTCTTGTCTGAGCTTACTTTAAATTCGAAGCCCATCATCACCGAACTTACCATCATCGCGGGAGACCAGAAGGAGCATGGCAAGGGTATATCTGATGCAATTTGCGATCGAATTCTTGAGGTGCCTTTGGAGCAAAAGCTTCCTTCACTATATCTTTTAGACAGTATTGTGAAGAATATTGGTGGGGAGTATGTTAGATACTTCTCCTTACGTCTTCCTGAAGTGTTCTGTGTGGCATATCGGCAAGTTCAGCCTAATTTACATCATGCAATGCGTCATCTCTTTGGTACCTGGTCAAAAGTCTTTCCAGCTTCTGTTCTTCGCAAGATTGAAGCGCAGCTGCAATTTTCTCAAGCAGTTAATAATCAGAATATATCATCTAGCATTAATCCCCCTAGGGTGTCTGAAGCTACACAGCGATCTCATGGCATTCATGTTAATCCAAAATACTTGCGACAGTTGGAAAACTCAACTATGGACACTGTAAGCTTTTCAATGAAACTTTTCTCTTCTTTTCAAAATGCTGCGGGGACTGGACTGCAGCTTGACAGTAAGGAGTTGTGTGCTTTCTGCTATATAGTGATTACTGCTGAATATTCGACATGCAATATAAACGTTTTCAATCTATATCTGGGAACCGATTTGAAAATGGATATCAATTCTGACGAGGTTGGTTTTTCCTCTCAGGATGGGGGTGCAATGCTGGATTCCACAAGAAGCGTGGGACATACAAATTTTGGCCTCGGAACTAATAAGATGCATCAGGCTTCAATTAGCAGGCATGGAAAACATTATCCTGGTGATGTTCGGAATCAATTCCAATTTTCTACAAATGGACATCAACTCCAAAGTCCAAGAGCTCTCATTGATGCCTATGGCAGTGACAAAGGGGTGGAAACTTCAAGCAATAAGCTGTTGGTTGAACCGCTTGACATAAAAGGTGTAGACAACAAGGTGGTGTCAACACCATGGCAGAATACTGAAGAGGAGGAGTTTAATTGGGAAGATATGAGTCCAACATTGGTGGAGCATAAGAGAAGTAATGGCATCTTACCGTCATCAATTGTTTTGTCTAGGGAGAGATCTAGTGGTATTGTTGCAGATAATGCTGCTGCTTTGGGTCAAGATACCAGAAGTGGTTGGGTTAGTCAATCTCTGCTTCCTCCCATGAATGATCCTTCTATTATAGCAGCAGATGCATTTGTGCGGTCGGGTAATGGTGGTAGATCATTGGGTCTGGTCTCCCATCCTCCTGATGCCTGGAAGATTTCTCATCATTTGCCTAATTCTTCACAACACATTAATATTAGAGGTCGAGCAAGGAATGCTCATGTGTCTCCTATTGATAGCATTCCAATTACTAAAGTAAACTCGTATGGGCTTGAGACTCGCCCACCAACTTTACCTGCATCTTTTCGAACTAGGCCACCTGTAAATGTGCATGCTAGTCGTCCACCCTCTTTAAATCCTATTTTTTCATTGCAGAAACATGCTAGGAACCAATTTGAAGCAATAAATAACGCCATTTTAGATCAAGGCCCTACTAAATCTTCATTAATGCCTGAACAGCTCTTGAACAGTGGTGAGAACAATAACCGTGGACAAGCATTACGACCTCAAATTTTTCCACCTCAGGATGTGAGAGAAAGTTTTGCTGAATCGCAAGCTCCAGCAGCTTATCAATTTAGTCATGGTGGCCCTTTGCAAAGACATGGTGCTGCTATCAGCGCAACTGTGTCCATGTCGTTACCTATTGGACAGTTTCCTTTACCAGTTCAAAACATGGCAAACAACAATTTTACTATACAGCAGGGAGCCTTGCGTCCATTTCCAGCTCCTCGTCCTCCATCACAAGGGATGCCTCATACCAATGATAGTCCATATACCTCGAGCCAACAGCCAGCTGGTGCATTTTCTGGTCTGATCAGTTCACTTATGGCACAAGGTTTGATCTCATTGACTGGACAACCCTCTGCACAGGATTCTGTTGGAACTGAATTTAATCCTGATGTTCTGAAGATCCGGCATGAGTCTGCAATTAGGGCTTTATATTCTGATCTCCCTCGACAATGCACAACTTGTGGTCTTCGATTCAAGAGTCAAGAGGAGCACAGTAGTCATATGGATTGGCATGTGACTAAGAATCGGATGTCTAAAAATCGTAAGCAGAAGCCTTCTCGTAAGTGGTTTGTGAGTGAGAGAATGTGGCTTAGTGGTGCAGAGGCATTGGGAACAGAAGTGGTACCTGGTTTTTTGCCAACGGAGACCATGGAGGAAAATAAAGAAGATGATGAGATGGCTGTGCCAGCTGATGAAGACCAGAATACATGTGCGTTATGTGGAGAGCCTTTTGAAGAGTTTTATAGTGATGAAACTGAGGAATGGATGTACAGAGGAGCTGTATACCTAAATGTTCCCAAGGGAACAGTGCCAGGCATGGATAGGTCACAGTTAGGTCCAATCGTTCATGCTAAATGCAGATCTGAGTCTAGTGCTGTCCCCGCCGAAGAATTTAGCCAGGATGACGTGGACGCTGATGAAGAGGGTAGTCAAAGAAAACGAATGCGGAGTTAA 3105 0.4477 MHRVTGRRRGPHLALSRGYGIGFGHAHANPILLLHFVVPSNSSTLFGAELSSFDSGEEKSCSTSHPVEEGQNPNPNHNPNSSLFLFHSSLDSLISMDSQRLLLSRENPRPLGFPTGRVLSSVTAKSVPAEMAQKPVPPAILERFKALLKRRDDERRDLSDDDAPPPSTEEIVQLYEIVLSELTLNSKPIITELTIIAGDQKEHGKGISDAICDRILEVPLEQKLPSLYLLDSIVKNIGGEYVRYFSLRLPEVFCVAYRQVQPNLHHAMRHLFGTWSKVFPASVLRKIEAQLQFSQAVNNQNISSSINPPRVSEATQRSHGIHVNPKYLRQLENSTMDTVSFSMKLFSSFQNAAGTGLQLDSKELCAFCYIVITAEYSTCNINVFNLYLGTDLKMDINSDEVGFSSQDGGAMLDSTRSVGHTNFGLGTNKMHQASISRHGKHYPGDVRNQFQFSTNGHQLQSPRALIDAYGSDKGVETSSNKLLVEPLDIKGVDNKVVSTPWQNTEEEEFNWEDMSPTLVEHKRSNGILPSSIVLSRERSSGIVADNAAALGQDTRSGWVSQSLLPPMNDPSIIAADAFVRSGNGGRSLGLVSHPPDAWKISHHLPNSSQHINIRGRARNAHVSPIDSIPITKVNSYGLETRPPTLPASFRTRPPVNVHASRPPSLNPIFSLQKHARNQFEAINNAILDQGPTKSSLMPEQLLNSGENNNRGQALRPQIFPPQDVRESFAESQAPAAYQFSHGGPLQRHGAAISATVSMSLPIGQFPLPVQNMANNNFTIQQGALRPFPAPRPPSQGMPHTNDSPYTSSQQPAGAFSGLISSLMAQGLISLTGQPSAQDSVGTEFNPDVLKIRHESAIRALYSDLPRQCTTCGLRFKSQEEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSERMWLSGAEALGTEVVPGFLPTETMEENKEDDEMAVPADEDQNTCALCGEPFEEFYSDETEEWMYRGAVYLNVPKGTVPGMDRSQLGPIVHAKCRSESSAVPAEEFSQDDVDADEEGSQRKRMRS 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1016 1034 Pfam CID domain 181 286 IPR006569 -
Lele45g1016 1034 MobiDBLite consensus disorder prediction 783 811 - -
Lele45g1016 1034 ProSiteProfiles CID domain profile. 167 295 IPR006569 -
Lele45g1016 1034 MobiDBLite consensus disorder prediction 57 79 - -
Lele45g1016 1034 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 153 1019 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Lele45g1016 1034 ProSitePatterns Zinc finger C2H2 type domain signature. 868 888 IPR013087 -
Lele45g1016 1034 SMART 558neu5 170 292 IPR006569 -
Lele45g1016 1034 FunFam polyadenylation and cleavage factor homolog 4 164 292 - -
Lele45g1016 1034 CDD CID_Pcf11 172 292 - -
Lele45g1016 1034 Gene3D - 163 293 IPR008942 -
Lele45g1016 1034 SUPERFAMILY ENTH/VHS domain 166 293 IPR008942 -
Lele45g1016 1034 MobiDBLite consensus disorder prediction 1004 1034 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1016 Lele-ChrLele45 20791771 20799083 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1016 96 614 C2H2 Transcription Factor Family AT4G04885 41.065 1.56e-94 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele45g1016 CID 1e-09 CL0020