Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1009 ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCACCCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCACAGGGTCAGGCGCCGCCTATGTGGGCTCCATCTGCCCAGCCTCCGCCGCCGCAGCAGGCTGTTGCTCCGCCGCAACCCATCCAACATGTCCCCCCGAGTAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTATCTGTATAATTGTTTTGCGCATACAGGGGAGGTGGCTTCTGTAAAAGTCATTCGGAATAAGCAAACTAATTCATCGGAAGGTTATGGGTTTATTGAGTTTTTCACCCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCAACTTTTAGTTCGGGTGATAGGCGTCATGATGATTCTCCAGATTACACAGTTTTTGTTGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTACAGGAGACATTTAGGGCCAGATATCCCTCAGTAAAGGGTGCAAAAGTGGTAATTGACAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATACAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGATTCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTAGGCAATTTGGATCCTAATGTTACAGATGATCATTTAAGGCAAGTTTTTGGCCAGTATGGAGAATTAATGCATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTCGTCCAATTCACCGATAGGAGCTGTGCCGAAGAGGCCCTACGGATGCTAAATGGATCAGTGTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGGGGATATTATGGTTATGCTCAAGGGTATGAGAATTATGGGTACCCTCCTGCTGCTACACAGGATCCCAACATGTATGGAAGCTATCCAGGTTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGATATAGCTAA 1206 0.4751 MMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQGQAPPMWAPSAQPPPPQQAVAPPQPIQHVPPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNSSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQNFRLNWATFSSGDRRHDDSPDYTVFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQIPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELMHVKIPAGKRCGFVQFTDRSCAEEALRMLNGSVLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS 401
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1009 401 CDD RRM3_NGR1_NAM8_like 268 339 - -
Lele45g1009 401 FunFam Polyadenylate-binding protein RBP45C 248 351 - -
Lele45g1009 401 MobiDBLite consensus disorder prediction 1 65 - -
Lele45g1009 401 Gene3D - 246 350 IPR012677 -
Lele45g1009 401 CDD RRM2_SECp43_like 163 242 - -
Lele45g1009 401 Gene3D - 8 158 IPR012677 -
Lele45g1009 401 MobiDBLite consensus disorder prediction 12 30 - -
Lele45g1009 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 269 341 IPR000504 GO:0003723
Lele45g1009 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 164 243 IPR000504 GO:0003723
Lele45g1009 401 SUPERFAMILY RNA-binding domain, RBD 254 367 IPR035979 GO:0003676
Lele45g1009 401 MobiDBLite consensus disorder prediction 387 401 - -
Lele45g1009 401 FunFam Polyadenylate-binding protein RBP45C 156 247 - -
Lele45g1009 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 166 229 IPR000504 GO:0003723
Lele45g1009 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 73 138 IPR000504 GO:0003723
Lele45g1009 401 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 271 334 IPR000504 GO:0003723
Lele45g1009 401 MobiDBLite consensus disorder prediction 380 401 - -
Lele45g1009 401 CDD RRM1_SECp43_like 72 152 - -
Lele45g1009 401 MobiDBLite consensus disorder prediction 31 62 - -
Lele45g1009 401 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 61 354 - -
Lele45g1009 401 Gene3D - 163 239 IPR012677 -
Lele45g1009 401 SUPERFAMILY RNA-binding domain, RBD 148 249 IPR035979 GO:0003676
Lele45g1009 401 SUPERFAMILY RNA-binding domain, RBD 34 154 IPR035979 GO:0003676
Lele45g1009 401 FunFam Polyadenylate-binding protein RBP45 10 155 - -
Lele45g1009 401 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 71 151 IPR000504 GO:0003723
Lele45g1009 401 SMART rrm1_1 72 147 IPR000504 GO:0003723
Lele45g1009 401 SMART rrm1_1 165 239 IPR000504 GO:0003723
Lele45g1009 401 SMART rrm1_1 270 337 IPR000504 GO:0003723
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Lele45g1009 Lele-ChrLele45 20735996 20739658 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1009 268 347 Eukaryotic Initiation Factors Gene Family AT4G34110 35.632 9.56e-07 48.9