Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lele45g1009 | ATGATGCAGCCTGGACCTGGCATGGCTCCCCCAAACATGGGTCAACAACCCACCCAACAATACCAGCAGCAGCAACCCTACATGATGATGCCACCACAGGGTCAGGCGCCGCCTATGTGGGCTCCATCTGCCCAGCCTCCGCCGCCGCAGCAGGCTGTTGCTCCGCCGCAACCCATCCAACATGTCCCCCCGAGTAGCGCCGATGAGGTCCGTACCCTCTGGATCGGCGATTTGCAGTACTGGATGGATGAGAACTATCTGTATAATTGTTTTGCGCATACAGGGGAGGTGGCTTCTGTAAAAGTCATTCGGAATAAGCAAACTAATTCATCGGAAGGTTATGGGTTTATTGAGTTTTTCACCCGTGCTGCTGCAGAGAGAATTCTTCAAACATTTAATGGCACAATTATGCCTAATGGTGGGCAAAACTTTAGATTGAATTGGGCAACTTTTAGTTCGGGTGATAGGCGTCATGATGATTCTCCAGATTACACAGTTTTTGTTGGAGACTTGGCTGCCGATGTCACAGATTACCTGCTACAGGAGACATTTAGGGCCAGATATCCCTCAGTAAAGGGTGCAAAAGTGGTAATTGACAGGCTCACTGGGCGGACGAAGGGTTATGGTTTTGTCAAGTTTGGAGATGAGAATGAACAGATACAAGCTATGACTGAGATGCAAGGGGTTCTTTGCTCAACAAGACCCATGCGAATTGGACCAGCCACAAACAAAAATGTTGGAGGACAGCAAAAAGCTTCCTATCAGATTCCTCAAGGGTCACAGAACGAGAATGATCCAAATAATACAACTATTTTCGTAGGCAATTTGGATCCTAATGTTACAGATGATCATTTAAGGCAAGTTTTTGGCCAGTATGGAGAATTAATGCATGTGAAGATTCCAGCAGGCAAGAGATGTGGATTCGTCCAATTCACCGATAGGAGCTGTGCCGAAGAGGCCCTACGGATGCTAAATGGATCAGTGTTGGGTGGACAAAATGTCCGTCTTTCATGGGGCCGCAGTCCTTCAAACAAACAGGCTCAGCCAGATCCAAGCCAGTATGGGGGATATTATGGTTATGCTCAAGGGTATGAGAATTATGGGTACCCTCCTGCTGCTACACAGGATCCCAACATGTATGGAAGCTATCCAGGTTATGCTAACTACCAACCACCACAGCAACAACAGCAAATGGGATATAGCTAA | 1206 | 0.4751 | MMQPGPGMAPPNMGQQPTQQYQQQQPYMMMPPQGQAPPMWAPSAQPPPPQQAVAPPQPIQHVPPSSADEVRTLWIGDLQYWMDENYLYNCFAHTGEVASVKVIRNKQTNSSEGYGFIEFFTRAAAERILQTFNGTIMPNGGQNFRLNWATFSSGDRRHDDSPDYTVFVGDLAADVTDYLLQETFRARYPSVKGAKVVIDRLTGRTKGYGFVKFGDENEQIQAMTEMQGVLCSTRPMRIGPATNKNVGGQQKASYQIPQGSQNENDPNNTTIFVGNLDPNVTDDHLRQVFGQYGELMHVKIPAGKRCGFVQFTDRSCAEEALRMLNGSVLGGQNVRLSWGRSPSNKQAQPDPSQYGGYYGYAQGYENYGYPPAATQDPNMYGSYPGYANYQPPQQQQQMGYS | 401 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lele45g1009 | 401 | CDD | RRM3_NGR1_NAM8_like | 268 | 339 | - | - | |
Lele45g1009 | 401 | FunFam | Polyadenylate-binding protein RBP45C | 248 | 351 | - | - | |
Lele45g1009 | 401 | MobiDBLite | consensus disorder prediction | 1 | 65 | - | - | |
Lele45g1009 | 401 | Gene3D | - | 246 | 350 | IPR012677 | - | |
Lele45g1009 | 401 | CDD | RRM2_SECp43_like | 163 | 242 | - | - | |
Lele45g1009 | 401 | Gene3D | - | 8 | 158 | IPR012677 | - | |
Lele45g1009 | 401 | MobiDBLite | consensus disorder prediction | 12 | 30 | - | - | |
Lele45g1009 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 269 | 341 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 164 | 243 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 254 | 367 | IPR035979 | GO:0003676 | |
Lele45g1009 | 401 | MobiDBLite | consensus disorder prediction | 387 | 401 | - | - | |
Lele45g1009 | 401 | FunFam | Polyadenylate-binding protein RBP45C | 156 | 247 | - | - | |
Lele45g1009 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 166 | 229 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 73 | 138 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 271 | 334 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | MobiDBLite | consensus disorder prediction | 380 | 401 | - | - | |
Lele45g1009 | 401 | CDD | RRM1_SECp43_like | 72 | 152 | - | - | |
Lele45g1009 | 401 | MobiDBLite | consensus disorder prediction | 31 | 62 | - | - | |
Lele45g1009 | 401 | PANTHER | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED | 61 | 354 | - | - | |
Lele45g1009 | 401 | Gene3D | - | 163 | 239 | IPR012677 | - | |
Lele45g1009 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 148 | 249 | IPR035979 | GO:0003676 | |
Lele45g1009 | 401 | SUPERFAMILY | RNA-binding domain, RBD | 34 | 154 | IPR035979 | GO:0003676 | |
Lele45g1009 | 401 | FunFam | Polyadenylate-binding protein RBP45 | 10 | 155 | - | - | |
Lele45g1009 | 401 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 71 | 151 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | SMART | rrm1_1 | 72 | 147 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | SMART | rrm1_1 | 165 | 239 | IPR000504 | GO:0003723 | |
Lele45g1009 | 401 | SMART | rrm1_1 | 270 | 337 | IPR000504 | GO:0003723 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lele45g1009 | Lele-ChrLele45 | 20735996 | 20739658 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lele45g1009 | 268 | 347 | Eukaryotic Initiation Factors Gene Family | AT4G34110 | 35.632 | 9.56e-07 | 48.9 |