Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g1001 ATGAGCAACTCAAATCATACAACCAAAATTGGCAAGGGCCATATTGATGCCAAAGAGACAAGAGCTGAAGATGCTCATCAGCTGCTGGAATTCTCTGAAGATGAGGAAGCACTCATTGCTAGAATGTTCAGATTGGTTGGCAACAGGTGGTCTTTGATTGCTGGGAGAATACCTGGAAGAACCGCTCAAGAGATAGAAAAGTACTGGACTTCCAATGGTGGGAAGGTTCAGAAAACTGACAGACACAAAGCTATGGACTTTGAGAAGAGGAAGGCAGCAACACTAGCTTCTCTTAGCTCAGTGGAAGCTGACAAATCTCCAAAAGGCTCCTTTGACACACCCATCATCCCTCTCCTCAACACCATCAATCAACACCCTTGTTTCTACACTACCAGTTCATGCTCTGGCCGAATCTCTATCCTTTCTCAACCTTTATCCAACCCCACCATTGATGCTCAAAAACCCAAGAAAAAAGCTCGAGGAGGTTCTTGGCTCTTCGTCTCCCACGACCCTGCCGATCCTGATTCAATCCTCAGCCTCCTTTTCCCCTCCAAGACAACTCCTTCTTCTGTTTCAACTGAGCCTTCTGAATTTGTCTTCAGATTCGAGCCCCTCATCATCGCTGTTGAGTGCAAAGACCTCTCTTCGGCTCAGTTGCTTGTTTCTTTGGCTATATCTTGCGGGTTCAGAGAGTCGGGCATTACTAATGCTAACAAGCGTGTGATTATAGCAATTCGGTGTTCGATAAGATTAGAGGTGCCTCTAGGGGATACTCACAAGATTATGGTGCCGCCTGAGTATGTTCGGTACCTTGTTGAAGTCGCAAATGAGAAAATGGATGCGAATAGGAAGAGAACCGAAAGGTTTTTTGGATTGTTGCAGTCCAATGGCTTTGTAGGATCTATGGCTGCTGGTAATAGTAATGATATGTCTACAAATGAGTCACTGAATCCTACTGATGTTTCCGTTCATGGAGAAGGTCTTGCTTGTGATAATGCTGAAGTTGGACATAGTGATGAGTTAGAAAGGAGGAATGGTGAAACCTCTTCAGGGCTTGTGGAAATTCCTGGTTGTAGTCTGCAGATCGTCCATATTGAAATTGTAGGTGAACCAGCTGAAAAGCTTTTCCTTTGGGGTCATTCTGCTTGTGCATTGGATAATGCCAGCCACAACAAAGTAGTTGTGTTTGGTGGCTTTGGAGGCATGGGGAGACATGCAAGAAGAAATGATTTATTGCTGCTTGATCCATATTCTGGTACTCTGGAAACAATGAGAACTGTTGGTGATTTATCGGTATCTCCACGCCTAGGCCATACATCTTCCCTGGTTGGAAATCACATGTTCTTGATTGGAGGCCGGACTGGCCCTGATAAGATTCTGAGTGAAGTTTGGGTCCTTGATACCGCTAAGAATTGTTGGAAGTTAATGCAATGTGGAGGTACTGACTTTCTTCCCAGGCATCGTCATGCTGCAGCTGTTGTGGGCTCAAGTATTTATGTATTTGGGGGACTCGATAATGATAATATCTTTTCTTCCTTTTATATTCTTGACACAATTGACTTAATCTGGAAAGAAGTGCCAATTTCGGGGGACTGGCCCTGTGCTCGTCATTCTCATGAAATGGTGGCACATGGTTCTCAGATCTTCATGTTCGGTGGATACAATGGTGCAAAAGCACTTGATGATCTGTATAGCTTTGATATTCAGAAGGGTCAATGGAAGAAGGAAAAGACAGCCGCAAGGAATCCTCATGCTAGGTTTTCCCACTCAATGTTTGTCTATAAAAATTATGTTGGAGTTATTGGTGGTTGTCCAGTTACACAGAATTTTCAAGAGTTGGCTTTACTTGATTTGCAGCTTCGCCAATGGAAGCATGTAATCCTTAATTCTGTCGGCAAAGATTTATTTGTGCGCAGTACAGCTTGTGTCATTGGCGATGACCTTGTTATGGTTGGTGGTGGTGCATCTTGCTATGCATTTGGAACCAAGTTTAGTGAGCCAGCAAAAGTTAGTTTGCTCCATTTAGTGCCTTCTTATGATAATCATATTGATGTTAAAAACAAAACAAAGCATATGAATAATCAAAATGATGTGGAAAATAAGACTAAGATTCAAAATTTCGAAGAACCACAACTTGACCATGTACCAGATATTGCTGCGAATGGTGACATGCATCTTGCTGATGAGTCACCTGTCACAAATGACCAATGTCAGATGGCTACATCACATTATGTTTTGAAGCTAGACAAGAGATTTGCAAAATTAGGGAAGGATATATTGAAGGAATTTGGATGGTTAGACCTAGGTAGGAAAGCATACTCACAGGAAGATGGATTACATATCTGTTTTCCTGTAATTAATGATTTTTTTCATATATTTCATGAAAGGAAGAATCATTCTGGAGACACAATTGAAGGAAAAGATGAAGTCAACTTCTCCAAGCCATCTAAAGGAAATGGATGCATATTAAATGACTTATCCGGTCCAAAAGCCTTGAGTCTTTTACATGAATATGGTGCAATTATACAGGAAGATGAAGTTGTTGAAGTCAGAAAAGCTGCAAAAACTCCTTTGAAAGTGATGACTGAAGCAATAACAACTTTGATTGAGCATCAAAGCCTACCTGCACAGCTGCTAGAGGAATTACCAACAAGGTGGGATCGACTTGGAGATATTATTATACTTCCAAATGCGTCTTTCAAAAATCCAATGTGGAACTCCATGGCAGAAGAGCTTTGGCCCACTGTTGCCAAATCACTCAAGGCTAATCGTCTTGCTCGCCAGGGCCCAGTTGCAGCAAACGGTACAAGAGATAGTACGTTGCAGATTCTTGTTGGAGATAATGGATGGGTTGACCATCGCGAAAATGGAATAATATATTCTTTTGATGCTAGCAAGTGCATGTTCTCATGGGGAAATCTTTCTGAGAAGCTTCGGATGGCCCGATTAGATTGTCGGGATGAGATTATAGTAGACCTGTTTGCAGGCATTGGATACTTTGTGCTGCCATTTCTTGTCAGGGCCAAGGCAAAATTTGTATATGCTTGTGAGTGGAATCCCCATGCCATAGAGGCACTCCAACGTAATCTTAAAGCAAATTCTGTGGCTGACCAATGTCTCATTCTTGAGGGAGATAATCGAAGTTTGGCTCCCAAAGGTGTTGCTGATAGAGTTTGTCTGGGTCTCCTTCCGTCGAGTGAGTGCAGTTGGGTCACAGCCGTGAGGTCATTAAGGAGTGAAGGTGGAGTACTACACGTGCATGGAAATGCGAAGGACTCAGAGGAAGGCCAGTGGACCGAACACGTGTTGAAGTCGATACAAGAAATTGCTAGATCTGAAGGTCATTGTTGGGAAGTTTCTATAGAACATGTGGAGAGGGTTAAATGGTATGCTCCACACATTCGCCACCTTGTTGTAGATGTAAGATGCAGACAGAGCCAAAGATAA 3447 0.4273 MSNSNHTTKIGKGHIDAKETRAEDAHQLLEFSEDEEALIARMFRLVGNRWSLIAGRIPGRTAQEIEKYWTSNGGKVQKTDRHKAMDFEKRKAATLASLSSVEADKSPKGSFDTPIIPLLNTINQHPCFYTTSSCSGRISILSQPLSNPTIDAQKPKKKARGGSWLFVSHDPADPDSILSLLFPSKTTPSSVSTEPSEFVFRFEPLIIAVECKDLSSAQLLVSLAISCGFRESGITNANKRVIIAIRCSIRLEVPLGDTHKIMVPPEYVRYLVEVANEKMDANRKRTERFFGLLQSNGFVGSMAAGNSNDMSTNESLNPTDVSVHGEGLACDNAEVGHSDELERRNGETSSGLVEIPGCSLQIVHIEIVGEPAEKLFLWGHSACALDNASHNKVVVFGGFGGMGRHARRNDLLLLDPYSGTLETMRTVGDLSVSPRLGHTSSLVGNHMFLIGGRTGPDKILSEVWVLDTAKNCWKLMQCGGTDFLPRHRHAAAVVGSSIYVFGGLDNDNIFSSFYILDTIDLIWKEVPISGDWPCARHSHEMVAHGSQIFMFGGYNGAKALDDLYSFDIQKGQWKKEKTAARNPHARFSHSMFVYKNYVGVIGGCPVTQNFQELALLDLQLRQWKHVILNSVGKDLFVRSTACVIGDDLVMVGGGASCYAFGTKFSEPAKVSLLHLVPSYDNHIDVKNKTKHMNNQNDVENKTKIQNFEEPQLDHVPDIAANGDMHLADESPVTNDQCQMATSHYVLKLDKRFAKLGKDILKEFGWLDLGRKAYSQEDGLHICFPVINDFFHIFHERKNHSGDTIEGKDEVNFSKPSKGNGCILNDLSGPKALSLLHEYGAIIQEDEVVEVRKAAKTPLKVMTEAITTLIEHQSLPAQLLEELPTRWDRLGDIIILPNASFKNPMWNSMAEELWPTVAKSLKANRLARQGPVAANGTRDSTLQILVGDNGWVDHRENGIIYSFDASKCMFSWGNLSEKLRMARLDCRDEIIVDLFAGIGYFVLPFLVRAKAKFVYACEWNPHAIEALQRNLKANSVADQCLILEGDNRSLAPKGVADRVCLGLLPSSECSWVTAVRSLRSEGGVLHVHGNAKDSEEGQWTEHVLKSIQEIARSEGHCWEVSIEHVERVKWYAPHIRHLVVDVRCRQSQR 1148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g1001 1148 FunFam tRNA wybutosine-synthesizing protein 2/3/4 85 295 - -
Lele45g1001 1148 Gene3D Vaccinia Virus protein VP39 949 1146 IPR029063 -
Lele45g1001 1148 CDD SANT 30 69 IPR001005 -
Lele45g1001 1148 FunFam tRNA wybutosine-synthesizing protein 2/3/4 949 1144 - -
Lele45g1001 1148 SUPERFAMILY Kelch motif 391 656 IPR015915 GO:0005515
Lele45g1001 1148 Gene3D - 78 295 IPR036602 -
Lele45g1001 1148 Coils Coil 15 35 - -
Lele45g1001 1148 FunFam MYB-like transcription factor 30 72 - -
Lele45g1001 1148 ProSiteProfiles Myb-like domain profile. 31 69 IPR001005 -
Lele45g1001 1148 Gene3D - 370 480 IPR015915 GO:0005515
Lele45g1001 1148 Gene3D - 481 668 IPR015915 GO:0005515
Lele45g1001 1148 SMART sant 27 75 IPR001005 -
Lele45g1001 1148 SUPERFAMILY SSo0622-like 85 293 IPR036602 -
Lele45g1001 1148 ProSiteProfiles SAM-dependent methyltransferase TRM5/TYW2-type domain profile. 886 1145 IPR030382 -
Lele45g1001 1148 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 875 1144 IPR029063 -
Lele45g1001 1148 PANTHER TRNA METHYLTRANSFERASE 95 1136 - -
Lele45g1001 1148 Gene3D - 858 946 - -
Lele45g1001 1148 Pfam Galactose oxidase, central domain 434 475 - -
Lele45g1001 1148 FunFam tRNA wybutosine-synthesizing protein 2/3/4 481 668 - -
Lele45g1001 1148 CDD AdoMet_MTases 990 1087 - -
Lele45g1001 1148 Pfam Met-10+ like-protein 885 1085 IPR030382 -
Lele45g1001 1148 SMART kelc_smart 497 546 IPR006652 GO:0005515
Lele45g1001 1148 SMART kelc_smart 547 596 IPR006652 GO:0005515
Lele45g1001 1148 SMART kelc_smart 446 496 IPR006652 GO:0005515
Lele45g1001 1148 Pfam Myb-like DNA-binding domain 30 70 IPR001005 -
Lele45g1001 1148 SUPERFAMILY Homeodomain-like 31 71 IPR009057 -
Lele45g1001 1148 Pfam Methyltransferase TYW3 89 294 IPR003827 -
Lele45g1001 1148 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 77 IPR017930 -
Lele45g1001 1148 Pfam Kelch motif 485 527 IPR006652 GO:0005515
Lele45g1001 1148 Pfam Kelch motif 535 575 IPR006652 GO:0005515
Lele45g1001 1148 Gene3D - 30 72 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g1001 Lele-ChrLele45 20646491 20658663 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g1001 471 658 Acyl Lipid Metabolism Gene Families AT3G05420 24.155 3.32e-09 59.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele45g1001 TYW3 5.6e-64 No_clan