Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0960 ATGGAAGAAGGTGGTTCTAATGGGACTTCTTCGTGTGTGATGGGTTTTGTTGGAGAGAACAGTAACAACAATAGTGGTGGTGGTGGGGGATTGTGTGCATCTTCATCTCATCCAATGATGATGATGATGCCTTTTGTGACTACTTGTCATAATGTTTCCCATCAAATTCCATTCAGTCCTAATCCTATCAATAATAATGCTCCTCCCTCGCACCCTGCTCCTTTCCTTCTTCCTTTCCCTCCTTCCTGCACTAATAACACTTCTACTAATCATCAACCCCAAAACCCCAACAACAACAACAGTTCTGGGTTAGCCTCCTTTTTCATGGACGCCGCCAACAACAACAACAACAACGACAACGGTAGCTCGTCTTCTTCTTCTGCTGCTGCTAAAGCAAAGATCATGGCTCATCCTCACTATCATCGTCTTTTGTCTGCCTATGTTAATTGTCAAAAGGTTGGAGCGCCGCCGGAAGCGGTGGCGAGGTTGGAGGAAGCATGTGCGTCTGCGTTGACAATGGCTGCTGCTGGCGGCGGCGGCGGGGGGTCGGGGTGTATCGGAGAAGATCCGGCGCTGGATCAGTTTATGGAGGCATATTGTGAGATGCTGACCAAGTATGAGCAAGAACTCTCCAAACCCTTCATGGAAGCTATGCACTTTCTTCATACCATCGAGTCTCAGTTCAAAGCTCTCGCTATTTCTTCTTCTTCAGACTTCGCTAGTGGTGAGGCGAGTGATCGGAATGGATCATCGGAAGAAGACATGGATGTGCCGAAGAATCTGATCGATCCACTGGCCGATGACCAAGAACTGAAGGGCCAACTTCTTCGCAAATACAGCGGATACCTGGGCAGCCTGAAGCAGGAATTTATGAAGAAGAGGAAGAAAGGGAAGCTTCCCAAAGAAGCAAGACAACAACTTCTTGATTGGTGGAGCAGACACTATAAATGGCCCTACCCATCTGAGTCACAGAAGCTGGCACTGGCAGAATCAACAGGACTGGATCAGAAGCAAATAAACAATTGGTTCATAAATCAAAGGAAGCGACATTGGAAACCATCAGAGGATATGCAATTCATGGTGGTGGATCCTTCTCATCCTCATCACCACTATTATATGGACACTGTTCTTGGCAATCCCTATCCAATGATCTAA 1155 0.4701 MEEGGSNGTSSCVMGFVGENSNNNSGGGGGLCASSSHPMMMMMPFVTTCHNVSHQIPFSPNPINNNAPPSHPAPFLLPFPPSCTNNTSTNHQPQNPNNNNSSGLASFFMDAANNNNNNDNGSSSSSSAAAKAKIMAHPHYHRLLSAYVNCQKVGAPPEAVARLEEACASALTMAAAGGGGGGSGCIGEDPALDQFMEAYCEMLTKYEQELSKPFMEAMHFLHTIESQFKALAISSSSDFASGEASDRNGSSEEDMDVPKNLIDPLADDQELKGQLLRKYSGYLGSLKQEFMKKRKKGKLPKEARQQLLDWWSRHYKWPYPSESQKLALAESTGLDQKQINNWFINQRKRHWKPSEDMQFMVVDPSHPHHHYYMDTVLGNPYPMI 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0960 384 ProSitePatterns 'Homeobox' domain signature. 328 351 IPR017970 GO:0000981|GO:0006355
Lele45g0960 384 ProSiteProfiles ELK domain profile. 270 290 IPR005539 GO:0003677
Lele45g0960 384 Pfam ELK domain 270 291 IPR005539 GO:0003677
Lele45g0960 384 CDD homeodomain 302 354 IPR001356 GO:0003677
Lele45g0960 384 SUPERFAMILY Homeodomain-like 292 369 IPR009057 -
Lele45g0960 384 MobiDBLite consensus disorder prediction 80 126 - -
Lele45g0960 384 FunFam Homeobox protein knotted-1-like 2 295 357 - -
Lele45g0960 384 Gene3D - 295 357 - -
Lele45g0960 384 ProSiteProfiles 'Homeobox' domain profile. 290 353 IPR001356 GO:0003677
Lele45g0960 384 Pfam KNOX2 domain 185 231 IPR005541 GO:0003677|GO:0005634
Lele45g0960 384 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 86 359 - -
Lele45g0960 384 SMART KNOX1_2 128 172 IPR005540 GO:0003677|GO:0005634
Lele45g0960 384 SMART ELK_2 270 291 IPR005539 GO:0003677
Lele45g0960 384 MobiDBLite consensus disorder prediction 62 79 - -
Lele45g0960 384 Pfam Homeobox KN domain 310 349 IPR008422 GO:0003677|GO:0006355
Lele45g0960 384 Pfam KNOX1 domain 131 168 IPR005540 GO:0003677|GO:0005634
Lele45g0960 384 SMART KNOX2_2 182 233 IPR005541 GO:0003677|GO:0005634
Lele45g0960 384 MobiDBLite consensus disorder prediction 60 126 - -
Lele45g0960 384 SMART HOX_1 292 357 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0960 Lele-ChrLele45 20311747 20317128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0960 130 383 Homeobox Transcription Factor Family AT1G62360 78.682 1.65e-126 367
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lele45g0960 KNOX2 6.8e-21 No_clan