Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0843 ATGAAGAGGGAAAGAGATCAACAGGTTCTTGATCACAGCATCGCCATGGCCAACTGTTTGATGTTGCTTTCTCGTGGAGTAAGCCACCAATTCGATCCGCCGATCATCGCCTCCTCCCATGACATCGACGTTGATAGCCACCACCGCATGTTCGAGTGCAAGACTTGTAACCGGCAGTTCCCATCGTTTCAAGCTCTGGGCGGCCACCGGGCGAGACATAAGAAGCCGAGGCCGGCCATCGCTGGACTCGATGGCGAGATGCACGTGCTTCATGACGTCTCCAAGCCTAAAACTCATGAGTGCTCCATTTGTGGAGTGGAGTTTGCAATAGGGCAAGCTTTGGGTGGTCACATGAGAAGGCACAGATCAGCTTCAACTGTTTTGAATAATAATGTTCACAAGAAATCGAGAACGACGACGTTGAGTGGCAGTAGTGATGGCAGTAGTAGTTGTCTTGATTCTGATCATCAGGTTCATAGTTCTGGAGAAAATAAGAAGAGGATTATGCTTTTGGATCTCAACTTGACACCTTTGGAGAATGATTTGGAGTTTTAA 555 0.4811 MKRERDQQVLDHSIAMANCLMLLSRGVSHQFDPPIIASSHDIDVDSHHRMFECKTCNRQFPSFQALGGHRARHKKPRPAIAGLDGEMHVLHDVSKPKTHECSICGVEFAIGQALGGHMRRHRSASTVLNNNVHKKSRTTTLSGSSDGSSSCLDSDHQVHSSGENKKRIMLLDLNLTPLENDLEF 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0843 184 SUPERFAMILY beta-beta-alpha zinc fingers 49 121 IPR036236 -
Lele45g0843 184 SMART c2h2final6 99 121 IPR013087 -
Lele45g0843 184 SMART c2h2final6 51 73 IPR013087 -
Lele45g0843 184 Gene3D Classic Zinc Finger 48 121 - -
Lele45g0843 184 PANTHER ZINC FINGER PROTEIN ZAT5 10 180 - -
Lele45g0843 184 MobiDBLite consensus disorder prediction 134 157 - -
Lele45g0843 184 MobiDBLite consensus disorder prediction 134 163 - -
Lele45g0843 184 ProSitePatterns Zinc finger C2H2 type domain signature. 101 121 IPR013087 -
Lele45g0843 184 ProSitePatterns Zinc finger C2H2 type domain signature. 53 73 IPR013087 -
Lele45g0843 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 99 126 IPR013087 -
Lele45g0843 184 Pfam C2H2-type zinc finger 99 123 - -
Lele45g0843 184 Pfam C2H2-type zinc finger 51 76 - -
Lele45g0843 184 ProSiteProfiles Zinc finger C2H2 type domain profile. 51 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0843 Lele-ChrLele45 19018196 19018750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0843 1 184 C2H2 Transcription Factor Family AT2G37430 42.105 5.11e-35 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele45g0843 zf-C2H2_6 3.6e-10 CL0361