Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0839 ATGGTACTCTCAAACAAGAAGCTTAAACAGAAGCTTAGAGCGGAGTTAGCTCAATCTCAGCCCGCAAATCCAGATTCTTCATTCAAAAATCTTCTTGACTCTGAGACCCAGAAAATCCAATTATCAAAAAGAGAGAAGCGCCGAAAGGTTCGCTCTTTGCAACAATCGGAGACTACCCAAGAAGGTGGTGATGGTTGTAGCGTTGATGAGAGTAAAGAAGACGACAGAACACAGAAGAAGAGCAAAAAGAGGAAGAGGAAGGCTGAGGACATCGCTGTGGCTAATGGGGATGTGAAGGATGCGAAGAAATCAAAGAAGAAACGTGATAAGAAGAACAAGAATAAGAACAAGAAAAAGTCCAAAACGGACCAGGAAAAGGATGCTAATCCTGGAGATGATAAGCTAGAGGCTTCAGAGTTAACTAAGAGCAATGGCAGTGAACAGAATGTTGATGTTCCTACAAAAGTGTATGTTGGAGGAATTCCCTACTATTCAACTGAGGATGATATTCGAAGCTATTTCGATGGCTGTGGCACAATTACTGAAATTGATTGCATGACGTTTCCTGAGACTGGCAAGTTTAGAGGGATCGCCCTTATTAGTTTTAAGACTGAAGCTGCTGCGAAACGAGCCTTGGCTCTTGATGGATCTGACATGGGAGGACTATTTCTTAAAATCCAACCATATAAAACAACTCGAACCATTAAAGCATCCGATTTCGCCCCGAAACCTGTGGATGGCTACAACAGAATCTATGTTGGAAATTTGTCATGGGACATAACAGAGGATCAATTAAGGTCTCTATTCTCGAACTGCAGCATATCATCCATATGTTTCGGTATGGATAAGGAGACGGGAGAATTTCGAGGTTACGCCCACGTGGATTTCACCGACAATCAATCAGTGAAAACAGCACTTGCCTTGGACCAAAAGATGATGTGTGGGAGACCTGTTAGGATAACTTGTGCAGTTCCTTTGAAGAAGCCATGGAAACAAGCAACAACTGATGCTGCGCCTACTACTACGAAGAACACCCAAGTTGAAAGTGAGAAGTCAAATTCCACTGGAAGTGGCAAAATGAAGAGGAGGACATGCTTTGAGTGTGGTGAAAAGGGACATATTTCTTCTGCATGCCCAAAGAAACAGAATGCTGATTCAGACACAACCTAG 1170 0.4282 MVLSNKKLKQKLRAELAQSQPANPDSSFKNLLDSETQKIQLSKREKRRKVRSLQQSETTQEGGDGCSVDESKEDDRTQKKSKKRKRKAEDIAVANGDVKDAKKSKKKRDKKNKNKNKKKSKTDQEKDANPGDDKLEASELTKSNGSEQNVDVPTKVYVGGIPYYSTEDDIRSYFDGCGTITEIDCMTFPETGKFRGIALISFKTEAAAKRALALDGSDMGGLFLKIQPYKTTRTIKASDFAPKPVDGYNRIYVGNLSWDITEDQLRSLFSNCSISSICFGMDKETGEFRGYAHVDFTDNQSVKTALALDQKMMCGRPVRITCAVPLKKPWKQATTDAAPTTTKNTQVESEKSNSTGSGKMKRRTCFECGEKGHISSACPKKQNADSDTT 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0839 389 MobiDBLite consensus disorder prediction 118 140 - -
Lele45g0839 389 MobiDBLite consensus disorder prediction 16 37 - -
Lele45g0839 389 MobiDBLite consensus disorder prediction 334 360 - -
Lele45g0839 389 MobiDBLite consensus disorder prediction 333 361 - -
Lele45g0839 389 SUPERFAMILY RNA-binding domain, RBD 242 328 IPR035979 GO:0003676
Lele45g0839 389 MobiDBLite consensus disorder prediction 87 103 - -
Lele45g0839 389 ProSiteProfiles Zinc finger CCHC-type profile. 365 380 IPR001878 GO:0003676|GO:0008270
Lele45g0839 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 154 231 IPR000504 GO:0003723
Lele45g0839 389 SUPERFAMILY Retrovirus zinc finger-like domains 351 384 IPR036875 GO:0003676|GO:0008270
Lele45g0839 389 SMART c2hcfinal6 364 380 IPR001878 GO:0003676|GO:0008270
Lele45g0839 389 MobiDBLite consensus disorder prediction 1 150 - -
Lele45g0839 389 CDD RRM2_PHIP1 250 320 IPR034362 -
Lele45g0839 389 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 70 228 - -
Lele45g0839 389 Gene3D - 341 389 - -
Lele45g0839 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 156 222 IPR000504 GO:0003723
Lele45g0839 389 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 251 318 IPR000504 GO:0003723
Lele45g0839 389 CDD RRM1_PHIP1 156 227 IPR034361 -
Lele45g0839 389 SMART rrm1_1 155 227 IPR000504 GO:0003723
Lele45g0839 389 SMART rrm1_1 250 321 IPR000504 GO:0003723
Lele45g0839 389 Pfam Zinc knuckle 363 380 IPR001878 GO:0003676|GO:0008270
Lele45g0839 389 Gene3D - 237 331 IPR012677 -
Lele45g0839 389 SUPERFAMILY RNA-binding domain, RBD 152 232 IPR035979 GO:0003676
Lele45g0839 389 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 249 325 IPR000504 GO:0003723
Lele45g0839 389 Gene3D - 89 236 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0839 Lele-ChrLele45 18987071 18990487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0839 154 323 Eukaryotic Initiation Factors Gene Family AT3G16380 28.495 2.63e-08 53.9