Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0782 ATGAAGATGAACAGGTTGGAGAGATTTAGAACTATCAGTAAAGGCGCACGATCAACATGTTTGAGAGAAGTAGCGGTACAAGTTCCCGAAGATGATCAGGTTTATGAGCCTTCTAAAGAAGAACTCAGGAGCTACATTGATCCATATGAGTACGTTATTTGTTCAGAGTGCTATGAAGGTGGAGATGATGACATAATGTTACTATGTGACCTGTGTTATTCAGCGGTGCACACATATTGTGTTGGTCTGGGGCCGGAAGTACCTGAAGGTAATTGGTATTGTGGTGGTTGTAAACCACTTGCTTTGGGATCTTCATGTTCCCAAGTTCAAGCTACAAATGCAGAGGAGCACAAAGAGTAG 360 0.425 MKMNRLERFRTISKGARSTCLREVAVQVPEDDQVYEPSKEELRSYIDPYEYVICSECYEGGDDDIMLLCDLCYSAVHTYCVGLGPEVPEGNWYCGGCKPLALGSSCSQVQATNAEEHKE 119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0782 119 ProSiteProfiles Zinc finger PHD-type profile. 51 100 IPR019787 -
Lele45g0782 119 SUPERFAMILY FYVE/PHD zinc finger 29 99 IPR011011 -
Lele45g0782 119 Pfam PHD-finger 53 99 IPR019787 -
Lele45g0782 119 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 29 116 IPR013083 -
Lele45g0782 119 ProSitePatterns Zinc finger PHD-type signature. 54 97 IPR019786 -
Lele45g0782 119 PANTHER F18C1.6 PROTEIN 8 117 - -
Lele45g0782 119 SMART PHD_3 53 98 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0782 Lele-ChrLele45 17474455 17474814 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0782 52 118 PHD Transcription Factor Family AT5G58610 43.284 6.74e-10 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele45g0782 PHD 1.3e-09 CL0390