Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0540 ATGAGATCCAGGTCGCGCCGTGTGGTGCAGGACGGTTCCCCAATGGAGGAGCCTGTTACTGATGGGTTGAAGCAGAGTTCTTGGGTCCACATGCCTCAGGAGCTTCTCAGGGAGGTTTTGTTCCGAATTGAGGACTCCGAGAGCTCTTGGCCGCCGCGTAAGAGTGTGGTGGCCTGCGCTGGAGTGTGCCGGAGTTGGAGGGAGATCACCAAGGAGATCGTCAAGCCGCCTGAAGTTTCTGCCAAGATCACGTTCCCGATCTCCGTCAAGCAGCCTGGCCATAGAGATCATCTTCTTCAGTGCTTTATAAAGCGCAACCGCTCTTCACAAACATACTATTTGTTCCTCAGCTTAACTAGTGCTCTAGCTGATGATGGGAAGTTCCTTTTGGCTGCACGCAAGTGCAGGCGTCCAACCTGCACAGATTATATCATCTCTCTAGATGCTGATGATATGTCAAATGGAAGCTACACCTATATCGGGAAGCTGCGATCAAATTTTCTGGGGACAAAGTTCACAATATATGATGGGCAACCACCTCATGCAGGCGCAAAAATTTTGAAAAGTCGGTCCACTAGGCTGGTGAATCTGAAGCAAGTTTCACCCCGGGTCCCCACTGGTAACTACCCAGTGGCCCACATTTCATATGAATTAAATGTGTTAGGCTCCAGGGGGCCTAGGAGAATGAATTGTGTGATGGATTCCATTCCTGCCTCTGCAATTGAACCAGGAGGGGTAGCACCGACGCAGACTGACTTGTCTCTAAGCAACATTGATGTGTTTCCTTCATTTCCATTTTTCCGGTCAAAATCGAATCACATGGAAAAATCCGAATCAGGGCCCCTGGGTGATAAAAAAGATGGGTAG 867 0.496 MRSRSRRVVQDGSPMEEPVTDGLKQSSWVHMPQELLREVLFRIEDSESSWPPRKSVVACAGVCRSWREITKEIVKPPEVSAKITFPISVKQPGHRDHLLQCFIKRNRSSQTYYLFLSLTSALADDGKFLLAARKCRRPTCTDYIISLDADDMSNGSYTYIGKLRSNFLGTKFTIYDGQPPHAGAKILKSRSTRLVNLKQVSPRVPTGNYPVAHISYELNVLGSRGPRRMNCVMDSIPASAIEPGGVAPTQTDLSLSNIDVFPSFPFFRSKSNHMEKSESGPLGDKKDG 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0540 288 PRINTS Tubby superfamily signature 143 159 IPR000007 -
Lele45g0540 288 PRINTS Tubby superfamily signature 208 235 IPR000007 -
Lele45g0540 288 PRINTS Tubby superfamily signature 159 183 IPR000007 -
Lele45g0540 288 PANTHER TUBBY-RELATED 20 257 - -
Lele45g0540 288 Gene3D - 21 74 - -
Lele45g0540 288 SUPERFAMILY F-box domain 12 71 IPR036047 GO:0005515
Lele45g0540 288 Pfam Tub family 89 256 IPR000007 -
Lele45g0540 288 Gene3D Tubby Protein; Chain A 88 280 IPR025659 -
Lele45g0540 288 SUPERFAMILY Tubby C-terminal domain-like 77 258 IPR025659 -
Lele45g0540 288 MobiDBLite consensus disorder prediction 1 20 - -
Lele45g0540 288 Pfam F-box domain 30 74 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0540 Lele-ChrLele45 4257855 4260167 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0540 2 259 TUB Transcription Factor Family AT2G47900 71.154 7.60e-134 383
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele45g0540 Tub 2.5e-56 CL0395