Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0532 ATGGCGAGGCAGTCAAAGGCACAGGCTTCTTCCGATGAAGCCATGTCCAACACCTCCAATTCCTCCGAAGAGGAGCGTGTCAACGAGCAGATCAACGATGAAGAGGACGAAGAAGAGTTGGAAGCTGTGGCTCGCTCTGCTAGCTCCAACGATAACGATGATGAAGCCGCTGATGGTGATGCGCCGAGTTCTGATGAGGATGTGGCTGCCGCTGGAGTTGATGACAAGGAGGAACTGGATGATGGATATGTTGATCCAGAAATTAGCAAGCGTGAGAAGGCCAGATTAAGAGAAATGCAGAAATTGAAGAAACAAAAGATTCAGGAGATGTTGGATCAGCAAAATGCTTCTATTGATGCAGATATGAACAATAAAGGAAAGGGGCGCTTGAAGTATCTCCTACAGCAAACTGAGTTGTTTGCTCATTTTGCCAAAGGTGATCAAAGTACCTCTCAGAAGAAGTCAAAAGGAAGTGTTTTACCTTACCTGAACGAGAAGAACGTATTCTGTGTTAATTGTTGCCTTAGGGGTCGCCATGCATCTAAAGTAACTGAAGAAGAGGAAGATGAAGAGTACCTCAAAGAAGAAGATAGTTTAGCAGGAAATACACGGCTGGTGACACAACCATCATGTATTCAAGGGAAGATGAGGGATTACCAACTTGCTGGTCTAAACTGGCTTATAAGATTGTATGAGAATGGCATAAACGGAATTCTGGCAGATGAAATGGGGCTCGGTAAAACATTGCAAACTATCTCTTTATTGGGTTATTTGCATGAGTTCAGAGGAATCAAAGGTCCTCATATGGTAGTTGCTCCAAAATCTACTCTTGGAAATTGGATGAATGAAATTAGGCGCTTTTGTCCTCTTTTGCGTCCAATAAAGTTTCTTGGCAATCCTGATGAAAGGAGACACATCAGAGAGGAATTATTGGTTGCTGGGAAGTTTGATGTATGTGTTACAAGTTTTGAGATGGCAATCAAGGAGAAGTCTGCATTGCGTCGTTTTAGTTGGCGGTACATAATTATTGATGAAGCCCATCGAATCAAGAATGAGAATTCTTTACTTTCTAAAACAATGCGGCTATACAATACAAACTATCGGCTTCTTATCACTGGTACACCTCTTCAGAACAATCTCCATGAGCTCTGGGCTCTTCTCAATTTTCTTCTTCCAGAAATATTTAGTTCTTCTGAAACTTTTGATGAGTGGTTTCAAATCTCTGGTGAAAATGACCAGCAAGAGGTCGTTCAACAACTGCACAAGGTTCTCCGCCCATTTCTCCTTCGAAGGTTAAAGTCAGATGTTGAGAAGGGTTTGCCACCAAAAAAAGAAACCATTCTCAAAGTAGGAATGTCACAAATGCAGAAACAATATTACAGGGCTTTACTGCAGAAGGATCTTGAGGTTGTCAATGCTGGTGGAGAGAGAAAACGTCTCCTAAATATAGCTATGCAACTGCGTAAATGCTGTAATCACCCATATCTTTTCCAAGGTGCTGAACCTGGTCCTCCTTATACCACTGGAGATCATCTCATTACCAATGCTGGTAAAATGATGACCAGGCTCCTAGACATACTTGAAGATTACTTGATGTTTCGTGGATATCAATATTGCCGTATTGATGGTAATACTGGTGGAGATGATCGTGATGCTTCTATTGAATCTTTCAATAAACCTGGAAGTGAAAAATTTGTCTTCTTGTTATCGACTCGGGCTGGAGGTCTTGGCATTAATCTTGCTACTGCAGATGTTGTCATTCTATATGACAGTGATTGGTCAGTATTTTTTGAATTATCTGTACCATACTTTTGCTCTCTGTTGATGTATACCATTGAGGAAAAAGTCATTGAAAGAGCTTACAAAAAGCTTGCGCTCGATGCACTGGTGATTCAGCAAGGGCGATTAGCTGAGCAGAAGACTGTAAATAAAGATGAGTTGCTTCAAATGGTCAGATTTGGTGCTGAAATGGTTTTCAGTTCAAAGGATAGTACAATTACAGATGAGGATATTGACAGAATTATTGCTAAAGGAGAAGAAACAACAGCTGAACTTGACGCCAAAATGAAGAAATTTACTGAAGATGCAATCAAGTTTAAGATGGATGACACAGCTACTGAGTTGTATGATTTTGATGCTGATAAGCAAACCCATCAAAAGAATCAGGTAAAGGACTCAATTGATGTTGAGGAACCAGAAGATCCTTTGACTGCTGAGGAGCTGGAAGAAAAAGAACGCCTGCTAGAGGAGGGATTTTCATCGTGGAGCCGAAGGGATTTCAACACTTTCATTAGGGCATGTGAAAAGTATGGTCGAAATGATATAAAAAGTATTGCTTCTGAGATGGAAGGTAAAACAGAGGAGGAAGTTGAAAGATATGCTAGGGTCTTCAAAGAGAGATACAAGGAATTAAATGACTATGATCGAATTATTAAAAATATTGAAAGAGGAGAGGCCAGAATATCCCGTAAAGATGAGATTATGAAAGCTATTGGGAAGAAGCTGGACCGCTATAAGAACCCATGGCTAGAGTTGAAGATACAATATGGCCAAAATAAGGGGAAGTTGTACAATGAAGAATGTGACCGATTCATGATATGCATGGTTCACAAACTTGGTTATGGGAATTGGGATGAGTTGAAGGCAGCATTTCGCACATCACCCTTGTTTCGGTTTGATTGGTTTGTTAAGTCCCGCACAACACAGGAACTTGCAAGGAGATGTGATACACTCATTCGGTTGGTAGAGAAGGAAAACCAAGAATTTGATGAGCGGGAGAGACAAGCTCGTAAAGAAAAGAAACTTGCCAAGAACATGACCCCTTCAAAACGTGCATTGGCAAGACAAACGGATAGTCCATCTTCTCTGAAGAAGCGCAAGCAATTAACTATGGACGACTATGTTAGCACGGTATTAATCTTTTCTTTGCAGAGGGATATGAATTATATATTCCTTCCTGATTTTCATTCAGCTTAA 2976 0.4073 MARQSKAQASSDEAMSNTSNSSEEERVNEQINDEEDEEELEAVARSASSNDNDDEAADGDAPSSDEDVAAAGVDDKEELDDGYVDPEISKREKARLREMQKLKKQKIQEMLDQQNASIDADMNNKGKGRLKYLLQQTELFAHFAKGDQSTSQKKSKGSVLPYLNEKNVFCVNCCLRGRHASKVTEEEEDEEYLKEEDSLAGNTRLVTQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGIKGPHMVVAPKSTLGNWMNEIRRFCPLLRPIKFLGNPDERRHIREELLVAGKFDVCVTSFEMAIKEKSALRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSSETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITNAGKMMTRLLDILEDYLMFRGYQYCRIDGNTGGDDRDASIESFNKPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWSVFFELSVPYFCSLLMYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEETTAELDAKMKKFTEDAIKFKMDDTATELYDFDADKQTHQKNQVKDSIDVEEPEDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYARVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVEKENQEFDERERQARKEKKLAKNMTPSKRALARQTDSPSSLKKRKQLTMDDYVSTVLIFSLQRDMNYIFLPDFHSA 991
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0532 991 MobiDBLite consensus disorder prediction 925 939 - -
Lele45g0532 991 CDD SANT 754 798 IPR001005 -
Lele45g0532 991 MobiDBLite consensus disorder prediction 1 25 - -
Lele45g0532 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 203 431 IPR027417 -
Lele45g0532 991 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 98 961 - -
Lele45g0532 991 CDD SF2_C_SNF 520 593 - -
Lele45g0532 991 FunFam Chromatin-remodeling complex ATPase 217 432 - -
Lele45g0532 991 Gene3D iswi atpase 806 838 - -
Lele45g0532 991 CDD DEXHc_SMARCA1_SMARCA5 213 433 IPR044754 GO:0005524
Lele45g0532 991 Pfam SNF2-related domain 229 496 IPR000330 GO:0005524|GO:0140658
Lele45g0532 991 SUPERFAMILY Homeodomain-like 754 804 IPR009057 -
Lele45g0532 991 Pfam Helicase conserved C-terminal domain 529 595 IPR001650 -
Lele45g0532 991 MobiDBLite consensus disorder prediction 925 958 - -
Lele45g0532 991 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 228 393 IPR014001 -
Lele45g0532 991 Gene3D - 217 432 IPR038718 -
Lele45g0532 991 SMART ultradead3 212 404 IPR014001 -
Lele45g0532 991 Coils Coil 912 935 - -
Lele45g0532 991 MobiDBLite consensus disorder prediction 1 91 - -
Lele45g0532 991 SMART sant 853 914 IPR001005 -
Lele45g0532 991 SMART sant 751 800 IPR001005 -
Lele45g0532 991 SUPERFAMILY Homeodomain-like 806 928 IPR009057 -
Lele45g0532 991 Gene3D - 839 942 - -
Lele45g0532 991 Gene3D - 751 805 - -
Lele45g0532 991 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 495 665 IPR001650 -
Lele45g0532 991 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 680 IPR027417 -
Lele45g0532 991 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 751 805 - -
Lele45g0532 991 FunFam ISWI chromatin-remodeling complex ATPase CHR11 839 942 - -
Lele45g0532 991 Gene3D - 603 694 IPR027417 -
Lele45g0532 991 Gene3D - 437 599 IPR027417 -
Lele45g0532 991 SMART helicmild6 525 654 IPR001650 -
Lele45g0532 991 Coils Coil 89 109 - -
Lele45g0532 991 ProSiteProfiles SANT domain profile. 750 802 IPR017884 -
Lele45g0532 991 Pfam SLIDE 808 918 IPR015195 GO:0003677|GO:0005634|GO:0006338
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0532 Lele-ChrLele45 4206908 4215272 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0532 521 598 RAD5 or RAD16-like Gene Family AT5G22750 33.333 7.67e-06 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele45g0532 SNF2_N 3e-71 CL0023