Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0524 ATGGAGCGGTACGGCCGGACCATTGAAGGGTCGCAGTCTGATCCGTCACCGGAATGGACCGGAACGGGAGGCGAAACAGGGCTCGAAGAGTCAGTGTGGCAATTGGAATTGGGTGGCGGTGAATCGTACCCGCAACGGCCCGATGAGGCTGATTGTATGTACTATTTGAGGACTGGTTTTTGTGGGTACGGCTCGCGATGTCGGTTCAATCATCCCCGAGACCGTGGCGCGGTTATTGGAGCTGCGAGGACGGGAGGGGAGTACCCAGAAAGAGCAGGCCAGCCTGTATGCCAGTATTATATGAGGACAAGATCTTGCAAATTCGGTCCCTCCTGCAAGTATCACCATCCTAGGCAGGGAGGAGGCACTGCTAGCCACGTGTCACTAAATTATTATGGATTTCCAATGCGACCGGGTGAGAAAGAGTGTTCCTATTATGTGAAAACGGGACAATGCAAGTTTGGCGCAACTTGTAAATTCCACCATCCACAGCCTGATAGCATGCAAATTCCAGCACAAACACCAGTTGCCCCGGTCTCACCTTTACCTGTACCAGTACCTTCCCCATTATATCCAACTGTACAGCCTCAATCTGGCCCTTCATCATCACAATATGGTTTAATGGTTGCAACTCCAAGGCCACATCTGCTACCTGGCTCATTAGTCCATAGTCCCTATGGGCATGTGGTTTTTCCCCCAGCTCTAGTCCCTTTTCCAGGATGGAGTCCTTATCAGCCTCCTGGAAGCCCCTTAGTTCCCTCAAGTACTCCATCTAATGTTGGTTCGGCACAGCTTTATGGGATAGGCCAGCTATCTTCATTGGCATCAACTTATACTGGACAGTATCAACCTTCAGGCTCCTCATTTGGTCCTTCTGGCAGTAGTCAGAAGGAACACTCATTTCCAGAACGACCTGGTCAGCCAGAATGTCAGTATTATATGAAAACGGGGGAGTGTAGATTTGGTCCATCATGTAGATATCATCATCCACCTGAATTAGTTGCTCCAAAAACGAAGGTGGTCCTTAGTCCTGTGGGCCTTCCTTTGCGCCCGGGTGCACCTCCTTGCACTCATTATGCACAGCGTGGGGTGTGTAAGTTCGGGCCAGCATGCAAATTTGATCATCCTGTTGGAGCACTGAGTTATAGTCCGTCTGCTTCCTCCCTAGCTGATATGCCAGTCGCGCCCTATCCTGTGGGCTCATCAATGGGCACTCTTGCTCCGTCATCTTCATCATCAGAATTGCGGCCTGAACTCTCCTCAGGATCCAGCAAGGAGTCTGCATCGTCCAGAATATCTTCGTCAATGAGCACATCGACAGCATCGGTTGGCTTGACCTTGTCATCTGGGGGATCCATTTCTCAATCGACTGCTCAACAATCTGCTCAGAGTTCCAGTCCTTCAGCAATCACCAATAGCACCCCCACAAGCAGCTCCGTCCCTCACACCTCTAGTTAA 1458 0.5082 MERYGRTIEGSQSDPSPEWTGTGGETGLEESVWQLELGGGESYPQRPDEADCMYYLRTGFCGYGSRCRFNHPRDRGAVIGAARTGGEYPERAGQPVCQYYMRTRSCKFGPSCKYHHPRQGGGTASHVSLNYYGFPMRPGEKECSYYVKTGQCKFGATCKFHHPQPDSMQIPAQTPVAPVSPLPVPVPSPLYPTVQPQSGPSSSQYGLMVATPRPHLLPGSLVHSPYGHVVFPPALVPFPGWSPYQPPGSPLVPSSTPSNVGSAQLYGIGQLSSLASTYTGQYQPSGSSFGPSGSSQKEHSFPERPGQPECQYYMKTGECRFGPSCRYHHPPELVAPKTKVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPVGALSYSPSASSLADMPVAPYPVGSSMGTLAPSSSSSELRPELSSGSSKESASSRISSSMSTSTASVGLTLSSGGSISQSTAQQSAQSSSPSAITNSTPTSSSVPHTSS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0524 485 MobiDBLite consensus disorder prediction 282 301 - -
Lele45g0524 485 Gene3D - 293 379 - -
Lele45g0524 485 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Lele45g0524 485 SMART c3hfinal6 350 377 IPR000571 GO:0046872
Lele45g0524 485 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Lele45g0524 485 SMART c3hfinal6 304 331 IPR000571 GO:0046872
Lele45g0524 485 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Lele45g0524 485 SUPERFAMILY CCCH zinc finger 308 332 IPR036855 GO:0046872
Lele45g0524 485 SUPERFAMILY CCCH zinc finger 138 166 IPR036855 GO:0046872
Lele45g0524 485 ProSiteProfiles Zinc finger C3H1-type profile. 304 332 IPR000571 GO:0046872
Lele45g0524 485 ProSiteProfiles Zinc finger C3H1-type profile. 350 378 IPR000571 GO:0046872
Lele45g0524 485 MobiDBLite consensus disorder prediction 1 27 - -
Lele45g0524 485 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
Lele45g0524 485 SUPERFAMILY CCCH zinc finger 354 380 IPR036855 GO:0046872
Lele45g0524 485 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Lele45g0524 485 SUPERFAMILY CCCH zinc finger 94 118 IPR036855 GO:0046872
Lele45g0524 485 Gene3D - 125 171 - -
Lele45g0524 485 MobiDBLite consensus disorder prediction 403 485 - -
Lele45g0524 485 MobiDBLite consensus disorder prediction 282 307 - -
Lele45g0524 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Lele45g0524 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 353 376 IPR000571 GO:0046872
Lele45g0524 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 306 331 IPR000571 GO:0046872
Lele45g0524 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Lele45g0524 485 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 73 IPR000571 GO:0046872
Lele45g0524 485 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Lele45g0524 485 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
Lele45g0524 485 Gene3D - 44 124 - -
Lele45g0524 485 PANTHER PROTEIN PHOSPHATASE RELATED 35 413 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0524 Lele-ChrLele45 4132148 4137300 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0524 1 446 C2H2 Transcription Factor Family AT5G18550 56.550 3.40e-155 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Lele45g0524 zf-CCCH 2.9e-08 CL0537