Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0483 ATGGATATTGCGGAGGTTGAAGAGAATATGTTCGCAACAAGTGATGCAAAGTTACATGGAGAATTGTGTAAGGCTCTCTCAGCATCATATTTCAAAGTATTGTCAATATTTCCATCTTTGGAAGCTGCTAGGCCCAGGAGCAAATCTGGGATCCAGGCACTATGTTCATTGCATGTGGCATTAGAGAAGGCCAAAAATGTTCTTCAGCATTGTTCGGAGTGTAGCAAGCTTTATTTGGCTATAACTGGGGATTCTGTTCTTCTAAAATTTGAGAAAGCTAAATGTGCTCTTGAGAATAGTCTTAAAAGGGTGGAAGACATTGTTCCACCATCTATTGGATGTCAGATTGAAGAGATTTTGAGTGAAGTTGAAAGTATGGAATTGGCACTTGACCCAATGGAGAAGCAAATTGGTGATAATTTAATCACTTTGCTCCAGCAGGGGAGAAAGTTTAGCGACTCTACCGATAGTAGTGAGCTTGAATGTTTTCACCAGGCTGCTACTAGACTAGGAATCACTTCTTCTAGAGCAGCCCTTACTGAAAGAAGAGCTCTCAAGAAACATATTGAAAGAGCTCGGGCTGAGGATGACAAGCGGAAGGAATCAATTGTTGCATATCTTTTACACCTTATGAGGAAATACTCTAAGTTATTTAGAAGTGAGTTTTCAGACGATAATGATTCTCAGGCTTCTACTCCTTGTTCTCCCACTGTTATGGGCTCTATAGAAGATGGTGTTGCTGGTGGTCATTACCAGGCCTTTGACCAACAGCTCTCAAAACTTAGTTCTTTTAATTTTAAGCCAAATAATAGAAAATCAGGGCAAATGCCCCTTCCACCTGAGGAGTTAAGGTGTCCAATATCTCTGCAACTTATGTATGATCCTGTTATAATTGCTTCTGGGCAAACATATGAGAGGGTTTGCATAGAGAAATGGTTCTGTGATGGACACAACACCTGCCCAAAGACTCATCAGAAACTTGCACATCTATCATTGACCCCTAATTACTGTGTTAAGGGTCTTGTTGCTAGTTGGTGTGAACAAAATGGAGTTCCTATTCCTGATGGCCCTCCTGAATCTCTTGACTTTAACTACTGGAGATTAGCATTATCTCAGTCTGAATCAACAAATTCGAGATCTGTGAACAGTGTCAACTCTTGTAAATTGAAGGGTGTCAAAGTGGTTCCTTTAGAAGAGACTGGGATCTCACATGAAGCCGGAGAAAATAGAACTGAAACTGTGTCTGCACAAGAGGAAGATACTGAGCAGTATCTTAGTTTTCTGAAAGTCTTGACTGAAGGGAACAGTTGTAAAAGGAAATGTAAAGGGGTAGAAAGGTTAAGGCTTTTGCTGAGGGATGATGAAGAAGCCAGGATTTTTATGGGGGCGAATGGGTTTGTTGAAGCACTTCTGCAGTTTCTGCGATCAGCAGTGTCTGAGGGGAATGCGACTGCTCAAGAAAGTGGAGCAATGGCCCTCTTTAACCTTGCTGTGAATAACAACAGGAATAAGGAGATCATGTTAGCAGAAGGAGTACTATCATTGCTAGAGGATATGATCTCTAATTCCTTCTCTTACGGCTGTGCAACGGCCCTCTATCTGAATCTCTCTTGCCTTGAAGAAGCCAAGCCTATGATTGGCAGGAGTCAGGCTGTCCAGTTCCTCATCCAGCTCCTCTTTCAACCTGACATTGAAGTCCTGGGCAAGCAAGATTCTCTTCATGCACTGTATAATCTATCCACTGTACCCTCCAATATTCCGAACCTCCTTTCATCTGGCATCATCAATGGCCTTCAATCCCTCCTTGCAGGCCAGGGTGACTGTATTGGGACTGAAAAATGCATAGCTATTTTGATCAATTTGGCTTCTTCTCATTTGGGAAGGGAGGAAATGATATCATCTCCGGGGCTCATAGGCGCGTTGGCTACCATATTGGATACCGGTGAGCTCGTAGAGCAAGAGCAAGCTCTATCTTGTCTACTAATTTTATGCAACGGGAACGAAATATGTAGCCAGATGGTCCTGCAAGAAGGCGTAATACCCGCATTGGTCTCGTTATCGGTGAATGGTACCTCAAGAGGAAGAGAGAAAGCTCTGAAATTCTTGATGCTGTTCAGAGAGCAGCGACAGCAAGACAATTCGCCTCCTAAGACACACCAGTTCCCGCCCAAAACTAGCGATATAAAGATGCCGCTTCCGGAAACAAAACCGCTATGTAAGTCAATGTCTAGGAAAAAAATGGGGAGGGCACTTAGCTTTTTATGGAAAACGAAGAGCTATTCTGTTTACCAGTGTTAG 2298 0.4282 MDIAEVEENMFATSDAKLHGELCKALSASYFKVLSIFPSLEAARPRSKSGIQALCSLHVALEKAKNVLQHCSECSKLYLAITGDSVLLKFEKAKCALENSLKRVEDIVPPSIGCQIEEILSEVESMELALDPMEKQIGDNLITLLQQGRKFSDSTDSSELECFHQAATRLGITSSRAALTERRALKKHIERARAEDDKRKESIVAYLLHLMRKYSKLFRSEFSDDNDSQASTPCSPTVMGSIEDGVAGGHYQAFDQQLSKLSSFNFKPNNRKSGQMPLPPEELRCPISLQLMYDPVIIASGQTYERVCIEKWFCDGHNTCPKTHQKLAHLSLTPNYCVKGLVASWCEQNGVPIPDGPPESLDFNYWRLALSQSESTNSRSVNSVNSCKLKGVKVVPLEETGISHEAGENRTETVSAQEEDTEQYLSFLKVLTEGNSCKRKCKGVERLRLLLRDDEEARIFMGANGFVEALLQFLRSAVSEGNATAQESGAMALFNLAVNNNRNKEIMLAEGVLSLLEDMISNSFSYGCATALYLNLSCLEEAKPMIGRSQAVQFLIQLLFQPDIEVLGKQDSLHALYNLSTVPSNIPNLLSSGIINGLQSLLAGQGDCIGTEKCIAILINLASSHLGREEMISSPGLIGALATILDTGELVEQEQALSCLLILCNGNEICSQMVLQEGVIPALVSLSVNGTSRGREKALKFLMLFREQRQQDNSPPKTHQFPPKTSDIKMPLPETKPLCKSMSRKKMGRALSFLWKTKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0483 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Lele45g0483 765 Coils Coil 175 195 - -
Lele45g0483 765 PANTHER U BOX DOMAIN-CONTAINING 28 708 - -
Lele45g0483 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Lele45g0483 765 Gene3D - 414 760 IPR011989 -
Lele45g0483 765 SUPERFAMILY RING/U-box 277 355 - -
Lele45g0483 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Lele45g0483 765 CDD RING-Ubox_PUB 283 325 IPR045210 -
Lele45g0483 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Lele45g0483 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 352 IPR013083 -
Lele45g0483 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Lele45g0483 765 SMART arm_5 454 498 IPR000225 GO:0005515
Lele45g0483 765 SMART arm_5 539 581 IPR000225 GO:0005515
Lele45g0483 765 SUPERFAMILY ARM repeat 428 708 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0483 Lele-ChrLele45 3755467 3759052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0483 1 764 U-box Gene Family AT1G24330 66.239 0.0 1024