LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele45g0453	ATGGTTAGGCAGAGCGGCTTAGAGCCAGATGCTTATCTGTGTAAGGTAATAATCCAAGGTTATTGCAAATCAGAAAGAGCAGCACTGGCATGGAGGATTTTTGAAGACATGAAGAATTCAGGTTTGATGCCTGATTCTGACGTTAAAGAATTGCTTGTGAAGAGCCTTTGGAAAGAAGGGAGAAGGAGGGAAGCGGCTGCAGTGGAAGAGAGCTGTGAGGAAATAAATGAGGTCCTTCCACTTGCATTACGTGGTCATGAATGGTCCGTCAGCTCTGCAGATCTCACAAGAAATCCCAAAACTGAAGAATCTATGGTCGATATGTGGACATTTGCATTTAGAGTTGGCATCCATCTTTCAGATTGCTTTGGAAAGGAAATTGGTTCATGCAAGAGAAAAGTTGAACAACAGAGTTCACTACATTTGACATTATTTTCTGCTGAAGCCTCCATTTCCAATCCAGACCTCTTAAGAATGGCCGTCTTCTTCCTTCCTTCTCATACAATATTTCTTGCACTCATTTTCTTCTCCACCTCCCTTGTTGCAGCTCAATCGCGAACCGACAATGGAACGGACTTCTCATGCCCTGCTGATTCACCACCTTCCTGTGAAACGTATGTATCATACTATGCCCAGTCTCCAAACTATTTGAGTCTAGTGAACATATCTGATGTATTCGGGATCAGTCCTTTATCCATTGCAAGAGCTAGTAACTTATCAGATGAAGATAATAAGCTGGTTCCAGGCCAGCTCTTACTGGTTCCTGTGACTTGTGGTTGCACTGGAAACCGTTCTTTTGCCAACATAACATACGAGATCAAGTTATGGGATAGCTACCGCTTTGTTTCATACACTGCATTTGAGAATCTCACGAATTATCATGTAGTGAAAGAGTTTAACCCCGGTCGGAATCCACATCTTTTGATGGGAGGCACCAAAATAGTCTTCCCTTTGTTCTGCAGGTGCCCTGCAAGAAGCCATTTGGCCAAAGGCATAAAGTTTTTGATAACGTATGTTTGGCAACCTAGTGACAATGTTACTGTCGTTAGTACCAAGTTTAATGCATCTGAGATGGACATAATGACAGAAAACAAATACCAGAACTTTACCTCTGCAGCCAACCTTCCAGTTTTGATCCCGGTGTCACAGCTTCCAGATGTTTCTCGACTTTATCTATCCCCAAAGAGAAAAGGAAACAATCATCGTCGTTCAGTTATCATAGGTATTATATTGGGATGCACTCTTCTGACTGTTCTTATAATGTTACTGGTCTATGTTTATTGTCTGAGAAAGAAAAATATTAGTTTGAAAAAGAGTGCTTCATTTCTGGAGACAGCAGATAAGCTACTTTCTGGGGTTTCGGGCTATGTAAGTAAGCCAACCATGTATGAGTTTAGTGTAATTATGGAAGCTACCATGAATCTTTATCAACAGTGCAGGATTGGGGGATCGGTGTACAAGGCCAAAATTGACGGGCAGGTCTTAGCAGTGAAAAAAGTGAAGGAAGATTTCATGGAGGAGCTAAAGATTCTGCAGAAGGTAAATCATGCGAATTTGGTGAAATTAAGGGGCGTCTCATCAGACAACAATGCTGGAAATTGCTTCTTGGTTTATGAATATGCTGAAAATGGATCTCTTGATAATTGGCTGTACTCCATGTCTGTTTCAGAAGCTTCTTCTGGTTTTGTGCCATTTCTCACATGGAGCCAAAGGATCTGCATTGCACTAGACGTGGCCATGGGTTTGCAATACCTGCATGAACACACTCAACCAAGAATAGTCCACAGGGACATCAGAACAAGTAACATACTTCTTGACTCGAGTTTCAAGGCGAAGATAGCGAACTTCTCGATGGCTAGAACTTCTATGAACCCAATGATGCTAAAAATAGATGTTTTTGCTTTCGGGGTTGTTTTGCTGGATTTGCTCACAGGGAAGAAAAGCATGATTACTAATGAAAAAGGCGAGGTAGTGATGATGTGGAAGGATATCAGAGAAATCTTTGATGCAGAGGAAGAGAAGAAGAAAGAGGATAGACTCAGAAAATGGATGGATCCTAGGCTGGGAAGCTTATATCCCATTGATGATGCTCTGAGCTTGGCATCCATGGCAGTGACTTGCACTGCAGAGAAGCCTTTGTCCAGACCAACCATGGCAGAAGTTGTTCTTAGCCTCTCGTTTCTGAGTCATTCAGGTCATAATGTCACAGTGGAACTATGGACTTCTGGTGGTGGATTAGATGCAGAAGTTCCTCAAATGATAAGTCCTATCACAGCTCGTTGA	2283	0.4218	MVRQSGLEPDAYLCKVIIQGYCKSERAALAWRIFEDMKNSGLMPDSDVKELLVKSLWKEGRRREAAAVEESCEEINEVLPLALRGHEWSVSSADLTRNPKTEESMVDMWTFAFRVGIHLSDCFGKEIGSCKRKVEQQSSLHLTLFSAEASISNPDLLRMAVFFLPSHTIFLALIFFSTSLVAAQSRTDNGTDFSCPADSPPSCETYVSYYAQSPNYLSLVNISDVFGISPLSIARASNLSDEDNKLVPGQLLLVPVTCGCTGNRSFANITYEIKLWDSYRFVSYTAFENLTNYHVVKEFNPGRNPHLLMGGTKIVFPLFCRCPARSHLAKGIKFLITYVWQPSDNVTVVSTKFNASEMDIMTENKYQNFTSAANLPVLIPVSQLPDVSRLYLSPKRKGNNHRRSVIIGIILGCTLLTVLIMLLVYVYCLRKKNISLKKSASFLETADKLLSGVSGYVSKPTMYEFSVIMEATMNLYQQCRIGGSVYKAKIDGQVLAVKKVKEDFMEELKILQKVNHANLVKLRGVSSDNNAGNCFLVYEYAENGSLDNWLYSMSVSEASSGFVPFLTWSQRICIALDVAMGLQYLHEHTQPRIVHRDIRTSNILLDSSFKAKIANFSMARTSMNPMMLKIDVFAFGVVLLDLLTGKKSMITNEKGEVVMMWKDIREIFDAEEEKKKEDRLRKWMDPRLGSLYPIDDALSLASMAVTCTAEKPLSRPTMAEVVLSLSFLSHSGHNVTVELWTSGGGLDAEVPQMISPITAR	760

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele45g0453	760	Pfam	Protein tyrosine and serine/threonine kinase	498	623	IPR001245	GO:0004672\|GO:0006468
	Lele45g0453	760	Gene3D	Transferase(Phosphotransferase) domain 1	625	727	-	-
	Lele45g0453	760	TIGRFAM	PPR: pentatricopeptide repeat domain	14	45	IPR002885	-
	Lele45g0453	760	ProSitePatterns	Tyrosine protein kinases specific active-site signature.	593	605	IPR008266	GO:0004672\|GO:0006468
	Lele45g0453	760	Gene3D	Transferase(Phosphotransferase) domain 1	541	624	-	-
	Lele45g0453	760	PANTHER	LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED	170	733	-	-
	Lele45g0453	760	SUPERFAMILY	Protein kinase-like (PK-like)	481	728	IPR011009	-
	Lele45g0453	760	Gene3D	Phosphorylase Kinase; domain 1	451	540	-	-
	Lele45g0453	760	ProSiteProfiles	Pentatricopeptide (PPR) repeat profile.	10	44	IPR002885	-
	Lele45g0453	760	ProSiteProfiles	Protein kinase domain profile.	443	728	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele45g0453	760	Pfam	PPR repeat family	9	46	IPR002885	-
	Lele45g0453	760	SMART	tyrkin_6	473	725	IPR020635	GO:0004713\|GO:0006468
	Lele45g0453	760	ProSiteProfiles	LysM domain profile.	208	254	IPR018392	-
	Lele45g0453	760	Gene3D	Tetratricopeptide repeat domain	1	78	IPR011990	GO:0005515

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele45g0453	Lele-ChrLele45	3526354	3530241	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele45g0453	208	734	Receptor kinase-like Gene Family	AT3G21630	31.624	4.53e-70	239

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LysM	Lele45g0453		PK_Tyr_Ser-Thr	7e-24	CL0016