Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0389 ATGGTGCTGGGATGGAATCGAAGAAAGAACAAGAACAGAAAGCTCAATCTGGAGCTTGTTATTCCAAACCATTTCATTTGTCCTGTTTCTCTTGATTTGATGAAGGATCCCATCACGTTATCATCTGGAATCACCTACGATCGTGCAAGCATCGAACGGTGGTTCGAAGATAGGAATTTCACGTGCCCTGTAACGAATCAGATTCTCTCGAGCTTCGATCTCGTTCCTAATCACTCGCTTAGGGTTATGATTCAGGATTGGAGCGTTGAGAATCGAGGATTTGGGATCGAGAGAATTCCGACTCCCAGAATACCTGTTTCTCCAACCCAAGTCGAAGAGATTCTTCTTCATCTTAAGGCCTCGGCGTCGCGTTTGGATCGGTATGGTTTTCTTCAAGGGGTGCAGAGAATCAAGGAATGGAGTTCTGAGAGCGAGAGAAACAGAAGGTGTATTGTGGACAATGGTACTCCTAGTGTATTATCCTCTGCATTTCGTGAATTCGCGAATGATTCCATTGAGGAAAATGTGAGTTTGCTGGAGGAGATTTTGAATGCCCTAAATTGGATGCTTCCGCTCCAATTCGAATCCCAAAAAATTTTGCAATCTTCAGATGCCTTGCGTTGCTTGGTTTGGTTCTTGAAGAATCAAGAACTTTCCGGAAAACAAAATGCCATTGTTGCTTTGAGAGAGATCCTTTCTTCTGGTGATGAAGAGACTTTTGAGACCATGGCAGAAATCGAAGGGACCATTGAGCTATTAGCGAAGTTCATCAACAAGAGAATTAACCCAACAATCACGAAAGCTTCAATGGGGATTGTTTATCACTTGGTTTCATCTTCTTATCCATCAATTGAGAAGGTGAAGCTGGAATTTGTTGGCCTTGGTTTGATCTCTTCACTTCTGGAGATCCTAATTGAAGCAGACAAGAGCCTATCTGAGAAGGCTTTAGGTGTTTTTGATTCACTCTGTGACTGTCAAAAAGGAAGAGAAAAGGCTTTCAGTAATGCTCTAACAGTTCCTGTGTTGGTGAAGAAGATTTTGAGGGTTTCGGCTTTGGCAACAGATCACTGTGTGTCTGCTATTTGGAAGTTATGCAGATATGGATCTAAAGATGATGAAGATGAAGTAGAAGAAGCTCTGATTGAAGCACTTCAAGTTGGTGCGTTTCAGAAGCTGTTGGTGGTCTTGCAGGTTGGTTGTGGTGATGAGACGAAGGAGAGAACAACAAAGCTCCTGAAACTGTTCAATCCTTATAGGGTCGGCTTGGAATGCATAGACTCAGATTTCAAGAATATCAAGAGATCATTTTGA 1311 0.4249 MVLGWNRRKNKNRKLNLELVIPNHFICPVSLDLMKDPITLSSGITYDRASIERWFEDRNFTCPVTNQILSSFDLVPNHSLRVMIQDWSVENRGFGIERIPTPRIPVSPTQVEEILLHLKASASRLDRYGFLQGVQRIKEWSSESERNRRCIVDNGTPSVLSSAFREFANDSIEENVSLLEEILNALNWMLPLQFESQKILQSSDALRCLVWFLKNQELSGKQNAIVALREILSSGDEETFETMAEIEGTIELLAKFINKRINPTITKASMGIVYHLVSSSYPSIEKVKLEFVGLGLISSLLEILIEADKSLSEKALGVFDSLCDCQKGREKAFSNALTVPVLVKKILRVSALATDHCVSAIWKLCRYGSKDDEDEVEEALIEALQVGAFQKLLVVLQVGCGDETKERTTKLLKLFNPYRVGLECIDSDFKNIKRSF 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0389 436 Gene3D - 115 413 IPR011989 -
Lele45g0389 436 SUPERFAMILY ARM repeat 173 378 IPR016024 -
Lele45g0389 436 ProSiteProfiles U-box domain profile. 20 94 IPR003613 GO:0004842|GO:0016567
Lele45g0389 436 CDD RING-Ubox_PUB 25 67 IPR045210 -
Lele45g0389 436 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 94 IPR013083 -
Lele45g0389 436 SUPERFAMILY RING/U-box 21 95 - -
Lele45g0389 436 Pfam U-box domain 21 92 IPR003613 GO:0004842|GO:0016567
Lele45g0389 436 FunFam RING-type E3 ubiquitin transferase 21 92 - -
Lele45g0389 436 PANTHER WDSAM1 PROTEIN 18 416 IPR045185 GO:0061630
Lele45g0389 436 SMART Ubox_2 24 87 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0389 Lele-ChrLele45 3038025 3039335 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0389 18 436 U-box Gene Family AT5G37490 42.654 6.92e-105 316