Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0380 ATGTTAGCCAATAACTCTCTCTCTTCAGCTCCTATTTCGGAGACCTTTCCTTGCGGTGATAATAATGGCGGTATCTCCACGAATAAAAGAAAGAGAAGACCCGCAGGAACTCCAGATCCGGATGCGGAGGTGGTGTCGCTGTCTCCAAAGACGTTACTGGAATCGGACCGGTACGTATGTGAGATCTGTAATCAGGGGTTTCAGAGGGACCAGAACTTGCAGATGCACCGGCGGAGGCACAAGGTGCCGTGGAAGTTGCTGAAGAGGGAGACGCCGGCGGCGAGGAAGCGCGTGTTCGTTTGCCCGGAGCCGACGTGCTTGCACCACGACCCGTGCCACGCCCTGGGCGATCTCGTCGGAATAAAGAAACACTTCAGAAGAAAACACAGTAACCACAAACAATGGGTCTGTGAACGCTGCTCTAAAGGCTACGCAGTTCAATCTGATTACAAAGCTCATCTCAAAACCTGTGGTACCCGAGGCCACTCTTGCGATTGCGGTCGCGTCTTCTCCAGGGTGGAGAGCTTTATCGAACACCAAGATGCTTGTAACATGGGGCGGCTCCGGTCGTTGGAAACACAGGCGCTACAGCAGCAGCCACAGATGGCGTGCTTGTCCCGAACGGCTTCGAGCCCGAGTCCGTCTAGCGAAACCAATTTCAGTACCAGTCCGAACTGGAATAATAACGGTCTTGTTGTGTTGCCTAAGCTGGCTAGTGAACCGTCATTGTTGAACCCTACCATTGCTGCTGCTGCTACGCCTACAACGGTTGCTCATCATCTTCATCATGAAACCTCATCGAACAACAAGAACAAGTATAAACTGTGTCCGAACTTGGACCTTCGTCTCTCTACCTCTAGTCCGATTACTCCCATTGATACTTCAACAACAACACCTAAGAGAGATGAAACCCGATCATCAAACCTCTTTCGGATTTCGATTTGCGACAAAAATATTGAATCCAATACCTGCTTCAATATTAATCATAATCGCAGGAATTCACCCAAGGAGAGCTGTAAAAGCAGCGATAAACCACAAGGTAGTAATGGAGCTGGGATGATGAGGCTGGTTCATCATGAAGAGGAAGCACGTGAGCAGTTAAGGTTAGCCATGGCGGAGAAGGCATATGCAGAGGAAGCAAGAAAGCAAGCGAAACGGCAGATAGAAGTTGCAGAGAAGGAATTTGCTAATGCAAAGAGAATCAGACAAGAAGCACAAGCTGAACTTGACAAAGCTTACGCCGTTAAAGAACATGCCATTAAACAGATCAACTCCCTCATGTTTCAAATCACTTGTCATGCTTGTAAACGACAGTTCGGATCCCAAACGATGCCGACAATGTCAACGGTTCCTCCTCCGGCGGCGGACGAGAACTCATTGGTAGTAAGCTACATGTCGTCTGCTCTAACAACTGAAGGAGGTGAAGAAGAGAACTATAAAAATAACAATGAGAAGCATGATGGGAAAAATAGTAACTCTTTATCATCTCTCTAG 1494 0.4826 MLANNSLSSAPISETFPCGDNNGGISTNKRKRRPAGTPDPDAEVVSLSPKTLLESDRYVCEICNQGFQRDQNLQMHRRRHKVPWKLLKRETPAARKRVFVCPEPTCLHHDPCHALGDLVGIKKHFRRKHSNHKQWVCERCSKGYAVQSDYKAHLKTCGTRGHSCDCGRVFSRVESFIEHQDACNMGRLRSLETQALQQQPQMACLSRTASSPSPSSETNFSTSPNWNNNGLVVLPKLASEPSLLNPTIAAAATPTTVAHHLHHETSSNNKNKYKLCPNLDLRLSTSSPITPIDTSTTTPKRDETRSSNLFRISICDKNIESNTCFNINHNRRNSPKESCKSSDKPQGSNGAGMMRLVHHEEEAREQLRLAMAEKAYAEEARKQAKRQIEVAEKEFANAKRIRQEAQAELDKAYAVKEHAIKQINSLMFQITCHACKRQFGSQTMPTMSTVPPPAADENSLVVSYMSSALTTEGGEEENYKNNNEKHDGKNSNSLSSL 497
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0380 497 MobiDBLite consensus disorder prediction 1 45 - -
Lele45g0380 497 Coils Coil 360 422 - -
Lele45g0380 497 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 17 471 IPR031140 -
Lele45g0380 497 Gene3D Classic Zinc Finger 36 100 - -
Lele45g0380 497 Pfam Zinc finger, C2H2 type 58 80 IPR013087 -
Lele45g0380 497 MobiDBLite consensus disorder prediction 1 25 - -
Lele45g0380 497 SUPERFAMILY beta-beta-alpha zinc fingers 57 155 IPR036236 -
Lele45g0380 497 MobiDBLite consensus disorder prediction 465 497 - -
Lele45g0380 497 SMART c2h2final6 135 162 IPR013087 -
Lele45g0380 497 SMART c2h2final6 58 80 IPR013087 -
Lele45g0380 497 SMART c2h2final6 99 129 IPR013087 -
Lele45g0380 497 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Lele45g0380 497 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 80 IPR013087 -
Lele45g0380 497 FunFam protein indeterminate-domain 12-like 37 105 - -
Lele45g0380 497 MobiDBLite consensus disorder prediction 328 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0380 Lele-ChrLele45 2958903 2961536 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0380 370 473 C2H2 Transcription Factor Family AT1G25250 54.717 2.76e-23 99.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele45g0380 zf-C2H2 0.0048 CL0361