Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0351 ATGTCTTCTGCCGGCGGCGACGGTGGAGGGAACGGTGGCGGCGACGGGGTTACCTACAGCGGTTCTTCTCAACTCTATTTTTGCCACCAGTGCAACGCCACCGTATCCATTACGCCTTCATCTTCCGGTGATCTTGTTTGTCCCAATTGCAACGGCGGGTTCATTGAGGAAGTCGATAATCCAAGCCCTAATTTTACTAATCCCTTCTTTTCGTTTACCTCTGAGTTTGGCAGCGGCGGCGACGGCTTCCCTCTAGTATTCTCTACCACTTCCACCGGCGGTGGTAGTGGTGCTGGGGGACCCATTTTCGACGATCTTTCTACTCTTTTTGGTGGTGGACCTAATCGATCGTCTCCATTTGGAGAAACTGATTCGTTCAACCCTTTTGTGTTTCTTCAGAACTATCTTCAAACCCTGAGAGCCGGCGGTGCTAATGTTCAATTTGTGATAGAGAACTCTGGAGACCCTAGTGGAACCTCCCGTCTGCCCACGAATCTCAATTTTGGTGATTATTTTTTTGGACCTGGCCTCGAGCAATTGATTCAACAGCTTGCGGAGAACGATCCTAACCGACATGGGACGCCCCCAGCTTCGAAATCTGCCATTGAGGGCCTCCCTACTATTAATATTTCAGAAGAGTTGCTGGCTTCGGATTCATCGCAGTGTGCCATTTGTAAAGATACATTTGAGCTCGGGGAAGAGGTGAAGCAGATGCCATGTAAACATATCTATCATTCAGATTGCATTTTGCCTTGGTTGGAATTGCATAATTCTTGCCCTGTTTGCCGGTACGAGTTACCAACGGATGATCCTGACTATGAGCAACAAACTCGTGGGACTTCTACCCAGGTGAATCAAAACCAATCTGCAGGTAGAGGTGGGTCCGCTGGTTCTTCTGAAGGCGGTAATAGTGGCAGTGGCGGTAATGGTGCCAGCGGTGGCGGCGGCAGTGCAGCATCTGGAGAAGACTCACCGAGAGAACGCAGGTTTAGGGTTTCTTTGCCTTGGCCTTTTAGGCAATTGGCTTCCATAGCCGAGACTAGCAGTACTGGGAATGCCAACCTCAGCGAAAATAATAGTGGGGAATCAAATTCTGGAAGAAGGGGAAACCAGAATTTTGAGTCGGAGACTAGACAAGAAGATCTCGATTAA 1152 0.4922 MSSAGGDGGGNGGGDGVTYSGSSQLYFCHQCNATVSITPSSSGDLVCPNCNGGFIEEVDNPSPNFTNPFFSFTSEFGSGGDGFPLVFSTTSTGGGSGAGGPIFDDLSTLFGGGPNRSSPFGETDSFNPFVFLQNYLQTLRAGGANVQFVIENSGDPSGTSRLPTNLNFGDYFFGPGLEQLIQQLAENDPNRHGTPPASKSAIEGLPTINISEELLASDSSQCAICKDTFELGEEVKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQQTRGTSTQVNQNQSAGRGGSAGSSEGGNSGSGGNGASGGGGSAASGEDSPRERRFRVSLPWPFRQLASIAETSSTGNANLSENNSGESNSGRRGNQNFESETRQEDLD 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0351 383 MobiDBLite consensus disorder prediction 342 372 - -
Lele45g0351 383 CDD RING-H2_RNF126_like 221 263 - -
Lele45g0351 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 269 IPR013083 -
Lele45g0351 383 SUPERFAMILY RING/U-box 202 270 - -
Lele45g0351 383 Pfam Ring finger domain 221 263 IPR001841 -
Lele45g0351 383 MobiDBLite consensus disorder prediction 272 383 - -
Lele45g0351 383 FunFam E3 ubiquitin-protein ligase RING1-like 183 269 - -
Lele45g0351 383 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 117 267 - -
Lele45g0351 383 MobiDBLite consensus disorder prediction 273 313 - -
Lele45g0351 383 Pfam zinc-ribbon 24 57 IPR039525 GO:0061630
Lele45g0351 383 SMART ring_2 222 262 IPR001841 -
Lele45g0351 383 ProSiteProfiles Zinc finger RING-type profile. 222 263 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0351 Lele-ChrLele45 2779792 2780943 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0351 163 312 C3H Transcription Factor Family AT5G01980 44.667 6.74e-38 140