Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0301 ATGGACTCTAGCAATTGTCATCATGTTATTGAACGTAAAAGGCCAATCCCTTCTTCTTCAGCCATTACTGAAGAGCTTATAGAACAGAAAAAGATAATACTAGTAAGGTACAAGGAATGCCTCAAGAACCATGCAGCTTCATTAGGTGGACATGCCATTGATGGTTGTGGTGAGTACATTTCTTCTTCAGAAGAAGAAGGCTCATTTGAAGCTTTCAAGTGCTCAGCCTGCAATTGCCACAGAAACTTCCACAGAAAGGAGATTCAATACTGTTATTCAAACTCATCTTCCTCAAATAGTACTTTCTGTTATAGCTCTGATCATCACCATTATCTCACCCCATTGCTTCCAAACGCCTCTCATCAGATCACAAACCCCATCATTCTGGATCATCTTTTGTTATCTCCCAACAAAACTGGCTCAAATCTGTCTGATCAGTCACATGATCATGACAGTAATAAGGATGATGATCATTGGGAAGAAGATCAGAAAGAGGTTGGGAAACCAGAAGATGAGAAGGTGATGATGATGAATAAGAAGAGGTTTAGGACTAAGTTCAGTGCAGAACAGAAGGAGAAGATGGTGAGATTTGCAGAGAAAGTAGGGTGGAAGATGCAGAAACTTGAAGAATCTGTGGTGCAGCAGTTTTGTGAAGAGATAGGAATCAAGAGGAGAGTTCTCAGAGTGTGGATGCACAATAACAAGAATACTTATGCTAAGAACTTGTGA 729 0.4019 MDSSNCHHVIERKRPIPSSSAITEELIEQKKIILVRYKECLKNHAASLGGHAIDGCGEYISSSEEEGSFEAFKCSACNCHRNFHRKEIQYCYSNSSSSNSTFCYSSDHHHYLTPLLPNASHQITNPIILDHLLLSPNKTGSNLSDQSHDHDSNKDDDHWEEDQKEVGKPEDEKVMMMNKKRFRTKFSAEQKEKMVRFAEKVGWKMQKLEESVVQQFCEEIGIKRRVLRVWMHNNKNTYAKNL 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0301 242 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 179 236 IPR006455 -
Lele45g0301 242 Pfam ZF-HD protein dimerisation region 35 88 IPR006456 -
Lele45g0301 242 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 36 88 IPR006456 -
Lele45g0301 242 FunFam Zinc-finger homeodomain protein 2 167 240 - -
Lele45g0301 242 MobiDBLite consensus disorder prediction 139 170 - -
Lele45g0301 242 MobiDBLite consensus disorder prediction 144 170 - -
Lele45g0301 242 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 37 87 IPR006456 -
Lele45g0301 242 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 25 237 - -
Lele45g0301 242 SUPERFAMILY Homeodomain-like 174 240 IPR009057 -
Lele45g0301 242 Gene3D - 163 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0301 Lele-ChrLele45 2418535 2419263 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0301 34 240 ZF-HD Transcription Factor Family AT1G14440 46.009 9.79e-59 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Lele45g0301 ZF-HD_dimer 3e-27 No_clan