Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0298 ATGAGTTCTCTGGCGGACCCTTCCGGACGAACTTGCGCTGCTGCCACCGCCGTCAGCACTGTTCCCTCACCTGCTGACGTGGCAGATCCTTTTCCGAGTCGGAGACCAGACGGACGGGACTCCACGCCGTCAGTGGTCTGTCTCGACGTCGTGGAAGAGGACATGGCCAGATCCAGATCAGTCTACTGCGATCAGTGTCGAGTTGTTGGTGAACTATGACTAGAGGCAGGGAACAGCTTTCCCAATGGGACAACAGCAAGCAATAAATCTTTGCGTTCTAAGTATCCGTCTGAAGTGAATCTCCTGCACGACTTGAGATATTTATACGAGTATTTGCTTCATCCGCATACGATGCCAAGCTATGACTCTGAGGGTACAAGGACTGCAGCAATGAGCTCTGCTCAGAAACTTCTTGACTGCAAGCATTTTGTAAAAGATTTAACTGTCCTGCCCTGGAATGCCACTCTGTCCGACCTCAAGACTGAAGCATCAAATGCTTTTCAAGATGTATATCTCATGTTTAAAAGATTTCAAGTTGATGAGCTTTTTGGCTGTAGCAGTGCAGATGATTCCACTCCGTTCAAACTCTTGATAGGATCAACGGGATTGGTTCGTGTCCAAGGAAAATGCATGGGGAAGAATGTATTTAGCAAGTTCCAAAGGGAACGTGGACTTGAGAGGTGGACCGTTGATTGCAGCTGTGGGGCCAAAGATGATGACTGGGAGAGAATATTGGCATGTGACGTGTGTGGAGTGTGGAGGCACACTAGATGTTCTAATATTCATGATGCAGATCCTGTCCCTGTGAGATTTTTTTGCCCAAGATGTCAAAATTTTGAGCTGAAGCCAAATTTAAGTGGACACTGA 867 0.4752 MSSLADPSGRTCAAATAVSTVPSPADVADPFPSRRPDGRDSTPSVVCLDVVEEDMARSRSVYCDQCRVVGELXLEAGNSFPNGTTASNKSLRSKYPSEVNLLHDLRYLYEYLLHPHTMPSYDSEGTRTAAMSSAQKLLDCKHFVKDLTVLPWNATLSDLKTEASNAFQDVYLMFKRFQVDELFGCSSADDSTPFKLLIGSTGLVRVQGKCMGKNVFSKFQRERGLERWTVDCSCGAKDDDWERILACDVCGVWRHTRCSNIHDADPVPVRFFCPRCQNFELKPNLSGH 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0298 288 MobiDBLite consensus disorder prediction 15 43 - -
Lele45g0298 288 PANTHER PHD FINGER PROTEIN MALE MEIOCYTE DEATH 1-RELATED 88 146 - -
Lele45g0298 288 CDD PHD_MMD1_like 231 276 - -
Lele45g0298 288 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 280 IPR013083 -
Lele45g0298 288 Pfam PHD-finger 232 278 IPR019787 -
Lele45g0298 288 SUPERFAMILY FYVE/PHD zinc finger 219 278 IPR011011 -
Lele45g0298 288 SMART PHD_3 231 277 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0298 Lele-ChrLele45 2400308 2406340 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0298 145 276 PHD Transcription Factor Family AT5G22260 30.597 3.93e-16 76.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lele45g0298 PHD 1.3e-07 CL0390