LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele45g0279	ATGGGGTTTTCATTTTCACCACTTACTTCCATCTTCTCTCTCCTGGTTATTGCTCTGTTGAACCCAAAATGGGTACGTGGGGATACAGAGCTTAGAGCACTTATGGATATCAAAGCCGCTTTGGACCCAGAAAGCCAATATCTTTCCTCATGGACTACTAAGGGAAAACCATGTGATGGTTCTTCGTTCGAAGGAGTTGGTTGTAACGAGAAGGGTCAAGTGGCTAACATTTCGTTGCAGGGAAAAGGTCTCTCAGGGAAGCTTTCACCCGCCATTGCAGAGCTCAAGCAACTTACAGGACTTTACTTGCATTATAACTCCTTGCAGGGAACTATTCCCAAAGAAATTGCCAACTTGACGAACCTAAGTGACTTGTATTTGAATGTGAATAATCTCTCTGGCGAAATCCCTCCTGAGATAGGCAAAATGGAGAACCTGCAAGTTTTGCAGCTTTGCTATAATCAGTTGACAGGAAGCATACCAACACAGGTTGGTTCACTGAAGAAGCTTGTTGTTCTTGCTCTGCAGTCAAATCAATTAGCTGGTGCCATCCCTGCAAGTTTAGGTGATTTGGGAATGCTAATGAGGCTCGATCTAAGCTCTAATCGCCTCTTCGGCTCCCTTCCCTCTACGTTAGCTGATGCTCCTTCTCTTCGAGTTCTAGATGTTCGCAACAACACTCTCTCTGGAAATGTACCTCCTGCTCTAAAGAGACTAGATGATGGATTTTTGTATGAGTACAATCTGGGATTATGTGGAGTTGGGTTTTCGTCCTTGAAAACTTGCAATGATTCAGATCATAGTAATCCAGAGAGACCTAGTAAACCTTATGGAGCTGGTTTTGGCGGTGCATCGGCGAAAGACATACCGGAAACTGCGAATGTGCCACTTCCTTGCAATGGAACTCAGTGCCAAAACTCATCAAAACCCAAACAATCAGCATCTATTATTGTTGGCATAGTTGTGTTTGCAATTGCAGTACCAACAATTGGTGTTCTAACTTTCACACAATACCGTAGGCGAAAACAAAAGCTCGGGAACTCATTCGATAATGTTATAATCACGACAAACCAAGCCAAGGGTACATACCAGAAAAATGGATCTCCTTTGGCCAGCCTTGAGTACTCTAACGGCTGGGACCCTTTAGCCGAAAGCCGGAATTTCATGGGGAATGATAACCATGATGATGTGTTCCATAGTTTCAGGTTCAACTTGGAAGAGGTTGAGACTGCTACTCAGTATTTCTCGGAGTCGAACTTGTTGGGTAAGAGTATCTTCAGCGCTACGTATAAGGGAATTTTAAGAGATGGATCTGTTGTTGCCGTTAAAAGAATCAGTAAAACAAGCTGCAAGAGTGATGACTCTGAGTTTTTGAAGGGACTTCACATTTTGACATCACTGAGGAATGAGAATTTAGTGAGGTTGAGAGGATTTTGTTGCTCGAGGGGCCGAGGCGAGTGCTTTCTGGTTTATGATTTTGTTCATAATGGAAATCTTTCGTGCTACCTCGATGTCAACGAAGGCGAAGGACAAGTCCTCGAATGGTCAACTAGAGTTTCCATGGTTAAAGGCATTGCTAAAGGAATAGCATATTTACATGCGTACGAGCCAAGCAAGCCGGCCCTTGTTCACCAAAACATCTCGGCAGAGAAAGTGCTCGTTGATCAGCGATTCAACCCGATGCTTTCGGATTCTGGCCTTCACAATCTTCTTACTGATGACATTGTCTTCTCAGCACTGAAGGCTAGTGCAGCAAAGGGTTATCTAGCTCCTGAATACACGACCACCGGGAGGTTCACGAAGAAAAGCGATGTGTATGCTGTTGGAGTGCTTCTTTTCCAGATCCTCTCGGGGAAAAGGAAGATCACTAGCTCGATGCGCCTCGCTGCAGAATCCTCCAGACTTGAGGAACTCATTGACCCGAATCTCCATGGCAGATTCATTAAATATGAGGCGGCAAAGCTCGTGAAAATGGCCATGCTTTGCTCCCATGAATCTCCTTTTGAGAGGCCATTGATGGAAGCCATTGTTATAGAACTTGCAAGTTTCAATATTTGTCTCTGA	2064	0.4438	MGFSFSPLTSIFSLLVIALLNPKWVRGDTELRALMDIKAALDPESQYLSSWTTKGKPCDGSSFEGVGCNEKGQVANISLQGKGLSGKLSPAIAELKQLTGLYLHYNSLQGTIPKEIANLTNLSDLYLNVNNLSGEIPPEIGKMENLQVLQLCYNQLTGSIPTQVGSLKKLVVLALQSNQLAGAIPASLGDLGMLMRLDLSSNRLFGSLPSTLADAPSLRVLDVRNNTLSGNVPPALKRLDDGFLYEYNLGLCGVGFSSLKTCNDSDHSNPERPSKPYGAGFGGASAKDIPETANVPLPCNGTQCQNSSKPKQSASIIVGIVVFAIAVPTIGVLTFTQYRRRKQKLGNSFDNVIITTNQAKGTYQKNGSPLASLEYSNGWDPLAESRNFMGNDNHDDVFHSFRFNLEEVETATQYFSESNLLGKSIFSATYKGILRDGSVVAVKRISKTSCKSDDSEFLKGLHILTSLRNENLVRLRGFCCSRGRGECFLVYDFVHNGNLSCYLDVNEGEGQVLEWSTRVSMVKGIAKGIAYLHAYEPSKPALVHQNISAEKVLVDQRFNPMLSDSGLHNLLTDDIVFSALKASAAKGYLAPEYTTTGRFTKKSDVYAVGVLLFQILSGKRKITSSMRLAAESSRLEELIDPNLHGRFIKYEAAKLVKMAMLCSHESPFERPLMEAIVIELASFNICL	687

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele45g0279	687	Pfam	Leucine rich repeat	169	228	IPR001611	GO:0005515
	Lele45g0279	687	Gene3D	Ribonuclease Inhibitor	27	177	IPR032675	-
	Lele45g0279	687	FunFam	Leucine-rich repeat receptor-like kinase	29	139	-	-
	Lele45g0279	687	SUPERFAMILY	L domain-like	30	237	-	-
	Lele45g0279	687	Pfam	Leucine rich repeat N-terminal domain	29	69	IPR013210	-
	Lele45g0279	687	SUPERFAMILY	Protein kinase-like (PK-like)	398	680	IPR011009	-
	Lele45g0279	687	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	79	681	-	-
	Lele45g0279	687	Pfam	Protein tyrosine and serine/threonine kinase	419	679	IPR001245	GO:0004672\|GO:0006468
	Lele45g0279	687	FunFam	Protein NSP-INTERACTING KINASE 2	494	684	-	-
	Lele45g0279	687	MobiDBLite	consensus disorder prediction	263	283	-	-
	Lele45g0279	687	FunFam	Protein NSP-INTERACTING KINASE 2	141	263	-	-
	Lele45g0279	687	Gene3D	Transferase(Phosphotransferase) domain 1	494	685	-	-
	Lele45g0279	687	FunFam	Protein NSP-INTERACTING KINASE 2	385	493	-	-
	Lele45g0279	687	ProSiteProfiles	Protein kinase domain profile.	415	683	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele45g0279	687	Gene3D	Ribonuclease Inhibitor	178	243	IPR032675	-
	Lele45g0279	687	Gene3D	Phosphorylase Kinase; domain 1	385	493	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele45g0279	Lele-ChrLele45	2277847	2280643	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele45g0279	10	528	Miscellaneous Gene Families	AT4G22730	54.269	0.0	552

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-IV	Lele45g0279		PK_Tyr_Ser-Thr	9.2e-34	CL0016