Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0247 ATGGGGGTGAAGCATCTGTGGGATATCCTTGAATCCTGCAAGAAAACAGTTCCACTTCGTCATCTCCAGAACAAGAGGATATGCATAGATCTCTCATGTTGGATAGTTCAACTTCAGAATGTGGGAAAATCAATCTCATGTGTGAAGGAGAAACTCTACCTCAGCGGTCTCTTTCACCGCATTAGAGCGCTCATTGCTTTGAATTGCAGTATAATTTTTGTTACAGATGGATCAATTCCTGGTATTAAATTATCAACTTATAGGCAACGTTTAAACTTTGGAAAAGATGTAGCACAAAATGAAATCAACCTACAGAAAATGTCTTCTTTACCGAGGAACAGGGGATCTGAGTTTTCATGCATGATAAAAGAGGCTCGCATCTTGGGAATGGCTCTTGGCATTCCTTGTCTGAACGGGATTGAAGAAGGTGAAGCTCAATGTGCTTTGTTGAACTCCGAATTATTGTGTGATGGATGTTTTAGTTCAGATTCAGATATCTTTCTTTTTGGTGCAAGGACAGTGTATAGGGATATCTGCCTTGGAGATGGGGGATATGTTGTTTGCTATGAGATGGAAGACATTGAAAGAAAACTTGGATTTGGAAGGGACTCATTGATTGCTCTTGCCTTACTTCTTGGGAGTGATTATAGTCAAGGAGTTTACGGTATAGGTCCGGAGTCAGCTAGTCAGATAGTTAGATCAATTGGTGACAAATGTGTGCTCCAAAAATTTGCTTCTGAAGGAATTGAAGGTCTGAAAACCCTGAAAGGTGCAAAGAAGCTGGGGCAAGTTTTCAAGAACAGCAACAAAGAAAATATGTTGGACCATGATATGGCATTGAATCATGGAGGCGAGAACAATTCACAAAAAGATTATAACTTCTTGCAAGTTATCAATGCTTATGTGAAGCCAAAATGCCACTCGGCAGACTCCGATATTGTGATGAGGGTTCTTGCTCAGTATCCATTTCAACGTAGTAAACTCCAGCAGATATGTGCTGAATTCTTTCAGTGGCCTCCGGAGAAAACAGATGAGTATATCCTTCCAAAGATAGCTGAAAGGAATTTACGACGATTTGCAAATTTGCGCTTAACTTCATCAGAAGCAGGAGCGAATCTTCCTTTGAATGAGATCCCTGTAAAGTGTCCTGTCTCGGAAATCATTAAGTGCCGAAAAGTTCAAGGAAGAGAATGCTATGAGGTGTCATGGAATGAAATGGATGGACTTGGAACTTCAATAGTACCGGCAGATCTTTTAAAAAGTGCTTGTCCTGAGAAGATTTTAGAGTTTGAGGAGAAAAAGGGTCGGCTCAAGAAACAAAATGCTCCAAAAAGAAGACCAAAGAAAACTGAAACTGCATCATCTTCTATGGCTGAACTTGACCTGAAACTCACGAATCTGTCACTGGATATCAATCTGGGAGACCATGCCAATAATCACAAAGCCTCTGATTCATCAGAACAGGTATTTCAAGATGAATCTGCCATGGATAATGAAGCTTATCTGCATAAGTGTTCATCACATGATGAGCAGATTGAATGGAATCAAAATGTGAGTAAGACATCTGAGAATCAGGAGGGTGATTCCATGGCTAGAAATGAGGTCATTGATTTACTGAGTCCTTCCCCACCTGAGCAGTTGCATGCTTCCTCCAAGTGTCAACAGTCGAATGGTGGACATATTGAGGTGATAAATTTGAGTGATTCAGACAGTGACACGTCACCTGAACATAAGAAGAAAGCAAAGGAGCTGAGAATGTTCTTAGATGGAATTAGGAATGACCTCCATTGA 1791 0.4059 MGVKHLWDILESCKKTVPLRHLQNKRICIDLSCWIVQLQNVGKSISCVKEKLYLSGLFHRIRALIALNCSIIFVTDGSIPGIKLSTYRQRLNFGKDVAQNEINLQKMSSLPRNRGSEFSCMIKEARILGMALGIPCLNGIEEGEAQCALLNSELLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVVCYEMEDIERKLGFGRDSLIALALLLGSDYSQGVYGIGPESASQIVRSIGDKCVLQKFASEGIEGLKTLKGAKKLGQVFKNSNKENMLDHDMALNHGGENNSQKDYNFLQVINAYVKPKCHSADSDIVMRVLAQYPFQRSKLQQICAEFFQWPPEKTDEYILPKIAERNLRRFANLRLTSSEAGANLPLNEIPVKCPVSEIIKCRKVQGRECYEVSWNEMDGLGTSIVPADLLKSACPEKILEFEEKKGRLKKQNAPKRRPKKTETASSSMAELDLKLTNLSLDINLGDHANNHKASDSSEQVFQDESAMDNEAYLHKCSSHDEQIEWNQNVSKTSENQEGDSMARNEVIDLLSPSPPEQLHASSKCQQSNGGHIEVINLSDSDSDTSPEHKKKAKELRMFLDGIRNDLH 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0247 596 CDD PIN_GEN1 2 198 - -
Lele45g0247 596 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Lele45g0247 596 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Lele45g0247 596 MobiDBLite consensus disorder prediction 434 457 - -
Lele45g0247 596 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 535 IPR006084 -
Lele45g0247 596 Pfam XPG N-terminal domain 1 90 IPR006085 GO:0004518
Lele45g0247 596 Gene3D - 2 199 - -
Lele45g0247 596 SMART xpgn3 1 97 IPR006085 GO:0004518
Lele45g0247 596 FunFam Flap endonuclease GEN-like 1 200 257 - -
Lele45g0247 596 MobiDBLite consensus disorder prediction 542 581 - -
Lele45g0247 596 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Lele45g0247 596 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Lele45g0247 596 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Lele45g0247 596 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Lele45g0247 596 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Lele45g0247 596 SUPERFAMILY Chromo domain-like 383 437 IPR016197 -
Lele45g0247 596 MobiDBLite consensus disorder prediction 544 570 - -
Lele45g0247 596 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Lele45g0247 596 SMART xpgineu 130 200 IPR006086 GO:0004518
Lele45g0247 596 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 362 IPR036279 -
Lele45g0247 596 CDD H3TH_XPG-like 203 246 - -
Lele45g0247 596 Gene3D - 201 271 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0247 Lele-ChrLele45 2043153 2047972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0247 1 236 Core DNA Replication Machinery Family AT5G26680 26.923 2.73e-12 67.0