Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0242 ATGATCGAAACCAGACGATTTCTATCCACCCTACCAACATGGTCTCACCGCCTACTCTTCCTTCTCCTAGTGATGATGTCCTTCTCCGGTGGCGCCGTTCCACACTCAGCTACTGCACCCTCGCCATCGCCGCTGTCGTCGAAGGGTCCCGATAAAGTCGACCTCGCGATTTTTGTCAAGGCCACAGCCTTAGTATGCGCCGTCATCTTCATCACCGTCTTTTCGATCTACATCAATTACTGGACCGCGTGGATGTTCGCCGGCCAGAACCATTTGGCCAGGGTCCGTGACGGCGTAAGTTGGCGGTGTTCTTGTTCTCGGGGAATCGACCGAGAAATCCTGAACACATTCCCGATCCTCGTGTATTCCACCATAAAAAACCACAGGATCGGAAAAGGAGAGCTCGAATGCGCAGTGTGCTTGAGCGAGTTCGAAGATCACGATACTCTCCGGTTGATACCAAAATGCAACCACGTGTTTCACCCGGAGTGTATCGACGCCTGGTTAGCTTCTCATGTGACTTGTCCTCTTTGTCGCGCAGATCTGAAACCAGATTCCGGCGAAGTAGCCATCGGAATGCCGACTCAGTTGAACGCTAATGAATTGAACGAAGAAAGTGAAGGCAGAAGCAGGAGAGGTGAAATGAGCGAAACACAGCATCACACGGTAGCGCAGGTGCCCAACGACGTCGGTCCGAGCAGTATCAACTCTTCAGGAACAGATAGAGCAAACAACAACATGGACGAAGCCAGAGCTAAGCAAAGTCGAAGTCGAAGATCGAGATGGAGAATGTACGAGAAGCTTCCGAGATCCAACTCCACTGGACATTCGCGGATTGAACAGCTGGTCACGTCGAACGATACGGAGAGGTATAAGCTAAGGTTGCCGGAGGAGCTGCGGAGGTATATTCTGATGAATCATGCAGCTATCGGACGTTCGGTGAGCTACCATGGTGTGACGCCGATGAAAGGGATGGGTTGGAGTGACAGCGAAGGAAGCAGCAGAGGGAAAAGGAACATGACGACGCCTCCAAGTGTTCATCGCCAGGATTAA 1053 0.5195 MIETRRFLSTLPTWSHRLLFLLLVMMSFSGGAVPHSATAPSPSPLSSKGPDKVDLAIFVKATALVCAVIFITVFSIYINYWTAWMFAGQNHLARVRDGVSWRCSCSRGIDREILNTFPILVYSTIKNHRIGKGELECAVCLSEFEDHDTLRLIPKCNHVFHPECIDAWLASHVTCPLCRADLKPDSGEVAIGMPTQLNANELNEESEGRSRRGEMSETQHHTVAQVPNDVGPSSINSSGTDRANNNMDEARAKQSRSRRSRWRMYEKLPRSNSTGHSRIEQLVTSNDTERYKLRLPEELRRYILMNHAAIGRSVSYHGVTPMKGMGWSDSEGSSRGKRNMTTPPSVHRQD 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0242 350 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 117 187 IPR013083 -
Lele45g0242 350 SMART ring_2 137 178 IPR001841 -
Lele45g0242 350 FunFam E3 ubiquitin-protein ligase ATL6 99 185 - -
Lele45g0242 350 SUPERFAMILY RING/U-box 129 188 - -
Lele45g0242 350 MobiDBLite consensus disorder prediction 325 350 - -
Lele45g0242 350 MobiDBLite consensus disorder prediction 246 266 - -
Lele45g0242 350 Pfam Ring finger domain 136 179 IPR001841 -
Lele45g0242 350 MobiDBLite consensus disorder prediction 204 218 - -
Lele45g0242 350 MobiDBLite consensus disorder prediction 219 245 - -
Lele45g0242 350 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 41 290 - -
Lele45g0242 350 MobiDBLite consensus disorder prediction 198 283 - -
Lele45g0242 350 MobiDBLite consensus disorder prediction 332 350 - -
Lele45g0242 350 ProSiteProfiles Zinc finger RING-type profile. 137 179 IPR001841 -
Lele45g0242 350 CDD RING-H2_EL5_like 136 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0242 Lele-ChrLele45 2018877 2020831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0242 18 306 Rapid Response to Elicitors AT3G05200 34.021 2.82e-46 160