Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0241 ATGATCAGATGGAAGAAGTCCCTCTGTCCTGATAGGAAAGGGAGCTTTACTGTAGAAGAAGATGAGCGCTTGATAGTGTCTGTCCATCTCTTTGGACGGAAATGGAATCAGATAGCTAGATTTGTTCTAGGCCGGACTCAAGCTCAGTGTAGAGACAGGTACGTCAATAGTTTGGATCCCTCTTTGAAATGGGGTGGATGGACTGAGGAAGAAGATTCGAGATTGAAAAAAGCAATTGCCAAATATGGATTCTGCTGGTCAAAGGTTGCTGCCTATGTGCCTCCACGAACTGACAGTCAATGCAGGAAGAGATGGCGGGTTCTATTTCCTGACCAAGTTCCTATGCTTCAAGCAGCTAGAAAGATGAAAAAATCTGCTCTGGTCGGTAACTTTGTTGATCGTGAGTCTGAACGGCCTTGCCTTTCTTTAAACGATTTTCTTCCTTTGGCACTGTTAGATCCACCATCTGATCCAGATGCTGTGAACCTCCCTCAGAAGCGGAAGAGTATGTCAAGCAATGCTTCTGAGAAAAAGAGGCCCCAAAAACGCACAAAAAAGGCTCAAAGTTGTCTCAAGAAAGCACAGGCTGACGAGGTTGAGCCTTGTAGTGGACACGGTGCCAACAAGCCAAAGATTATTGAACCACATTTGGAGGACAACTCTGTTGAAGCTGTGCATGATCACTCCCCGCTGGACTTGGTTGTGACAACAACGAATGGCCAAGGGGATTTAGGTGGACATAATAATATTGATAAGCTAATTGAGTCGAATCAAATGTGGGAGGGTTTTAATGAATTAGATGATGAGAGCCGTCCTTGTATAACACCTTGTGAGAATCCAGAAGCAGGGACAACAGATGGGCATTGTGAGGAAATCTCTTCTGTTGAGAGATTCCGAGATAATATACAAAGCAAGCTTATACAAGAAGCAATGTTTACATTGTTTTATGGACTTTGGAAGTATATGTTCAGTAAGATAGAGTTTCATGTGCTCATTCTTGGAATTGACAAGTCTGGGAAAACGACTTTATTGGAGAAGTTGAAATCAACGTACTCAAACTTAGAAGGACTTCCTCCTGATCGGATTGTTCCAACTGTTGGACTAAACATTGGTCGGATAGAAGTATCAAATACAAAACTTGTATTCTGGGACCTGGGAGGCCAGATACTGATGCCAGGCTTCTATCAGCCTGGACTTCGATCAATATGGGAGAAATATTATGAAGAAGCGCATGCTTTGATATTTGTTATTGATGCTGCATGTCCCTCACGCTTTGAAGATGCAAAGTCTGCACTTGAAAAGGTACTTCGGCACGAGGATTTACAAGGAGCGCCTCTTTTAATATTGGCAAACAAGCAGGATCTTCCTGAAGCAGTTTCAGCTGAAGAACTTGGTCGTTACCTAGATCTAAAGAAGCTGGGGGAAAGAGTTTACATGTTTGAAGCTGTATCAGGCTATGATGGAAAGGGGATAAAGGGAAGTGTAGATTGGTTGGTGGAAGTGATGGAGAGAAGTAAGAGGACTGAAATGTTGAGAGTTCGGGCTGGTGCAATGGGTTCAGGCCCTGCTTAG 1572 0.4351 MIRWKKSLCPDRKGSFTVEEDERLIVSVHLFGRKWNQIARFVLGRTQAQCRDRYVNSLDPSLKWGGWTEEEDSRLKKAIAKYGFCWSKVAAYVPPRTDSQCRKRWRVLFPDQVPMLQAARKMKKSALVGNFVDRESERPCLSLNDFLPLALLDPPSDPDAVNLPQKRKSMSSNASEKKRPQKRTKKAQSCLKKAQADEVEPCSGHGANKPKIIEPHLEDNSVEAVHDHSPLDLVVTTTNGQGDLGGHNNIDKLIESNQMWEGFNELDDESRPCITPCENPEAGTTDGHCEEISSVERFRDNIQSKLIQEAMFTLFYGLWKYMFSKIEFHVLILGIDKSGKTTLLEKLKSTYSNLEGLPPDRIVPTVGLNIGRIEVSNTKLVFWDLGGQILMPGFYQPGLRSIWEKYYEEAHALIFVIDAACPSRFEDAKSALEKVLRHEDLQGAPLLILANKQDLPEAVSAEELGRYLDLKKLGERVYMFEAVSGYDGKGIKGSVDWLVEVMERSKRTEMLRVRAGAMGSGPA 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0241 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 53 IPR017930 -
Lele45g0241 523 SUPERFAMILY Homeodomain-like 12 105 IPR009057 -
Lele45g0241 523 FunFam ADP-ribosylation factor-related protein 1 317 513 - -
Lele45g0241 523 CDD SANT 15 58 IPR001005 -
Lele45g0241 523 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Lele45g0241 523 SMART arf_sub_2 311 506 - -
Lele45g0241 523 CDD Arfrp1 330 501 - -
Lele45g0241 523 PANTHER ADP-RIBOSYLATION FACTOR-RELATED PROTEIN 1 311 517 - -
Lele45g0241 523 SMART rab_sub_5 328 505 - -
Lele45g0241 523 Pfam Myb-like DNA-binding domain 66 108 IPR001005 -
Lele45g0241 523 Pfam Myb-like DNA-binding domain 13 56 IPR001005 -
Lele45g0241 523 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 327 504 IPR027417 -
Lele45g0241 523 Pfam ADP-ribosylation factor family 322 500 IPR006689 GO:0003924|GO:0005525
Lele45g0241 523 CDD SANT 67 109 IPR001005 -
Lele45g0241 523 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Lele45g0241 523 SMART sar_sub_1 312 518 IPR006689 GO:0003924|GO:0005525
Lele45g0241 523 Gene3D - 325 518 IPR027417 -
Lele45g0241 523 MobiDBLite consensus disorder prediction 156 212 - -
Lele45g0241 523 ProSiteProfiles small GTPase Rab1 family profile. 320 523 - -
Lele45g0241 523 SMART sant 12 60 IPR001005 -
Lele45g0241 523 SMART sant 63 111 IPR001005 -
Lele45g0241 523 Gene3D - 10 64 - -
Lele45g0241 523 Gene3D - 66 112 - -
Lele45g0241 523 ProSiteProfiles Myb-like domain profile. 12 58 IPR001005 -
Lele45g0241 523 TIGRFAM small_GTP: small GTP-binding protein domain 327 462 IPR005225 GO:0005525
Lele45g0241 523 ProSiteProfiles small GTPase Arf family profile. 321 502 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0241 Lele-ChrLele45 2012057 2016751 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0241 3 190 MYB-Related Transcription Factor Family AT3G18100 50.265 2.14e-54 192
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele45g0241 Arf 5.8e-43 CL0023