Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele45g0238 ATGGCTCCGCCGCCGGTGGACCACAACGGCGAGTCCACGGCCGGTGACACCCAGAGATCTATTCCAACGCCGTTTCTCACCAAAACATATCAGCTCGTCGACGATCCCACCATAGACGATGTGATTTCGTGGAACGAAGACGGATCTACTTTCATCGTTTGGAACCCTACAGAATTCGCCAGAGATTTGCTCCCTAAATATTTTAAGCACAACAACTTCTCTAGCTTTGTTCGCCAACTCAACACCTATGGATTCAGGAAGGTTGTACCTGATCGGTGGGAATTCTCTAACGAGTGTTTCCGCAGAGGCGAGAAACGGCTTCTGTGCGAAATACAGCGACGGAAGATTTCAACGCCTTCGCCGCCGACAGCGACGTCGCCGACAGCCAAGGCCGGAGCCACTCCGACTGTGGCAGTACCGGCGCCGGTGCCGTTGACTTCTATACCGACGGCGATGCCGATGATATCGCCATCAAACTCAGACGGGGAGCAAGTGATTTCGTCGAATTCGTCGTCCTCAAAAGCTCCGGCTGAGCTCATGGACGAGAACGACAGGCTGCGAAAAGAGAACGTGCAGATGTCGAAGGAATTAGCCGAGATGAGATCTCTCTGTAACAATATTTTCTCTCTGTTGTCCAACTACGCCAACAACCAAATCGATGGTGCCGTGCAAGGAAAAGACACAGTGAGACCGCTGGATTCGAAGCCGTCGAAACGGAACTCCGGTGAGGAGGAGCCGTCGGCGGTGGATGAGTTAAATCCGAAGCTGTTTGGGGTGGCGATTGGTGCGAAGAGAGCGAGAGGAGCGGAGGAGGAGGACACACTGTTAAGCTTGCATCAGCCGGGGCCAGCGGAGGTGAAATGTGAGCCGTTGGATTGTCAGAACCATCGAGAGAACCAGGAGACACCGTGGCTGAAACCATGCGACATGCAAATCAGAGAGTGTGTAATTAGCGCACGAGCGAGGGAATACGATTAG 978 0.5348 MAPPPVDHNGESTAGDTQRSIPTPFLTKTYQLVDDPTIDDVISWNEDGSTFIVWNPTEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNECFRRGEKRLLCEIQRRKISTPSPPTATSPTAKAGATPTVAVPAPVPLTSIPTAMPMISPSNSDGEQVISSNSSSSKAPAELMDENDRLRKENVQMSKELAEMRSLCNNIFSLLSNYANNQIDGAVQGKDTVRPLDSKPSKRNSGEEEPSAVDELNPKLFGVAIGAKRARGAEEEDTLLSLHQPGPAEVKCEPLDCQNHRENQETPWLKPCDMQIRECVISARAREYD 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele45g0238 325 Coils Coil 183 203 - -
Lele45g0238 325 MobiDBLite consensus disorder prediction 225 251 - -
Lele45g0238 325 SMART hsfneu3 21 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele45g0238 325 FunFam Heat stress transcription factor B-4 17 115 - -
Lele45g0238 325 ProSitePatterns HSF-type DNA-binding domain signature. 64 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele45g0238 325 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 240 IPR027725 -
Lele45g0238 325 MobiDBLite consensus disorder prediction 158 178 - -
Lele45g0238 325 Gene3D - 17 115 IPR036388 -
Lele45g0238 325 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele45g0238 325 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele45g0238 325 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Lele45g0238 325 SUPERFAMILY "Winged helix" DNA-binding domain 22 114 IPR036390 -
Lele45g0238 325 MobiDBLite consensus disorder prediction 231 250 - -
Lele45g0238 325 MobiDBLite consensus disorder prediction 1 21 - -
Lele45g0238 325 MobiDBLite consensus disorder prediction 158 177 - -
Lele45g0238 325 Pfam HSF-type DNA-binding 25 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele45g0238 Lele-ChrLele45 2000706 2001772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele45g0238 1 306 HSF AT5G62020 48.615 2.02e-88 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Lele45g0238 HSF_DNA-bind 1.5e-33 CL0123