LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele45g0212	ATGGATGATGCTAAGAGCAACAGTGGTTCTGAACCTTCAACTTCTTACAGCTGTTTCAAAGTAGCAAATCTAAGTGAAACGATACTGGACACAAAGCAGTTTGCAAATTTGAAAGATTGTTATGTTCTTGGCGAGCAGTTAGGTTGGGGACAGTTTGGTGTTATCAGGGCGTGCACGGACAAGTTGACTGGAGAGGTTTTAGCCTGTAAATCAATTGCTAAAGATAGATTGGTCACATCAGATGATCTGCGAAGTGTTAAACTTGAGATTGAGATAATGGCTAGGCTATCTGGCCACCCAAATGTTGTAGATCTCAAGGCAGTTTATGAAGAGGAGGATTTTGTACATCTGGTGATGGAGCTTTGTGCTGGAGGTGAGCTATTTCACCGGCTAGAGAAGAATGGACGATTTTCTGAATCTGAAGCCCGGGTTCTCTTTAGGCACCTTATGCAGGTCCTTTTGTATTGCCATGAAAATGGGGTTGTTCATAGAGATTTGAAGCCTGAGAACATTCTCTTAGCAACAAGAGCCTCCTCATCTCCAATTAAATTGGCAGATTTTGGGCTTGCAACTTACATCAAGCCTGGACAAAGCTTGCATGGGTTAGTAGGGAGTCCATTCTATATAGCTCCAGAGGTACTTGCAGGTTCATATAACCAGGCTGCTGATGTTTGGAGTGCAGGTGTCATTCTTTACATTCTACTTAGTGGGATGCCTCCGTTTTGGGGTAAGACCAAGTCACGGATCTTTGAAGCCGTTAAGGCTGCTGACTTAAGGTTTCCATCTGAACCTTGGGATCACATTTCTAAATCAGCCAAGGATTTGATTAAGGGTATGCTCTGCACAGAACATTCTCGAAGGCTCACCGCTCAGCAGGTCTTAGATCATTGCTGGATGGAGAGCAATCAAACACATCCTGAACATCTAATTGAATGTGACATCAAAAGTTGTGGTGAATGGGATGTTGGTGATAGCTCATTCTCTGTGTCCTTTATGCCCAGGAATCAGGACATCAGCTTTGGCGCCGAATCTCCTGCATGTGATGCTCAGTCACCAACTTTCACATGCAGATCATCATTTTCTTCGTTTCTGGTGGAACCATCGACTCCTTGTTCAGCTTTGGGTTGGTTCTCATTTCAGAGTCCCGGCGATTCTGCTGGTTTGGACATCTCTCCTCCGGTTTCTTCAATGCCTAGCTTTGCATTTCTCAGCACCTATTCCGTTGTTGAGAAAAGGAGTTGCACATTAGAGTTCTCAACTAATGAATCTGTGAAGACAATTGCTCAAGAATCAAGCTTGGGAAAACTACTTCTATCACCAGATTCTGCTCTTTCTTGTGGACCGGATATTCAAGCGGGTAATCGCAAGCCAGTGGACACTAAAAGGGCAGGCGGTACCAATGGACATAGGGTTTTAGGAATCCACAGCAAGAGAAACCGAACGATTGGACTTGGCGAAGGTGAGCAAATTGACCTCGTGGTGACGGAATCTGTCATTCGATGGTCATCGTGCACGCAACTCCCGACATCTCTTAGGTCATCTCTTGTATGTTGA	1554	0.4466	MDDAKSNSGSEPSTSYSCFKVANLSETILDTKQFANLKDCYVLGEQLGWGQFGVIRACTDKLTGEVLACKSIAKDRLVTSDDLRSVKLEIEIMARLSGHPNVVDLKAVYEEEDFVHLVMELCAGGELFHRLEKNGRFSESEARVLFRHLMQVLLYCHENGVVHRDLKPENILLATRASSSPIKLADFGLATYIKPGQSLHGLVGSPFYIAPEVLAGSYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFEAVKAADLRFPSEPWDHISKSAKDLIKGMLCTEHSRRLTAQQVLDHCWMESNQTHPEHLIECDIKSCGEWDVGDSSFSVSFMPRNQDISFGAESPACDAQSPTFTCRSSFSSFLVEPSTPCSALGWFSFQSPGDSAGLDISPPVSSMPSFAFLSTYSVVEKRSCTLEFSTNESVKTIAQESSLGKLLLSPDSALSCGPDIQAGNRKPVDTKRAGGTNGHRVLGIHSKRNRTIGLGEGEQIDLVVTESVIRWSSCTQLPTSLRSSLVC	517

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele45g0212	517	FunFam	Calcium-dependent protein kinase 1	43	126	-	-
	Lele45g0212	517	PANTHER	SERINE/THREONINE-PROTEIN KINASE	33	310	-	-
	Lele45g0212	517	Pfam	Protein kinase domain	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele45g0212	517	Gene3D	Phosphorylase Kinase; domain 1	42	127	-	-
	Lele45g0212	517	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	161	173	IPR008271	GO:0004672\|GO:0006468
	Lele45g0212	517	ProSiteProfiles	Protein kinase domain profile.	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele45g0212	517	FunFam	Phosphoenolpyruvate carboxylase kinase	128	315	-	-
	Lele45g0212	517	SUPERFAMILY	Protein kinase-like (PK-like)	39	377	IPR011009	-
	Lele45g0212	517	SMART	serkin_6	41	299	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele45g0212	517	CDD	STKc_CAMK	41	298	-	-
	Lele45g0212	517	Gene3D	Transferase(Phosphotransferase) domain 1	128	317	-	-
	Lele45g0212	517	ProSitePatterns	Protein kinases ATP-binding region signature.	47	74	IPR017441	GO:0005524

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele45g0212	Lele-ChrLele45	1760963	1763375	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele45g0212	41	306	EF-hand Containing Proteins	AT3G57530	51.128	2.11e-97	300

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CDPK	Lele45g0212		Pkinase	3.3e-72	CL0016